Variant report

Variant	rs73703973
Chromosome Location	chr8:125195270-125195271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125191098..125195627-chr8:125383123..125386679,7	MCF-7	breast:
2	chr8:125192130..125196319-chr8:125210764..125213937,4	MCF-7	breast:
3	chr8:125182245..125183788-chr8:125194265..125196305,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253868	Chromatin interaction
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56810274	0.88[AFR][1000 genomes]
rs6995628	0.86[AFR][1000 genomes]
rs73328136	1.00[AMR][1000 genomes]
rs73703958	0.90[AFR][1000 genomes]
rs73703966	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv891429	chr8:125163219-125246937	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125184400-125195600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:125190000-125198600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:125191200-125196800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:125192000-125196000	Enhancers	NHDF-Ad	bronchial
5	chr8:125192200-125195400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:125192600-125196000	Enhancers	Hela-S3	cervix
7	chr8:125192600-125196000	Enhancers	NHLF	lung
8	chr8:125193000-125196000	Enhancers	NH-A	brain
9	chr8:125193200-125196000	Enhancers	HSMM	muscle
10	chr8:125193600-125196600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:125194000-125195600	Weak transcription	A549	lung
12	chr8:125194400-125195400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:125194400-125195400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:125194400-125195600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:125194400-125195600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:125194400-125195600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:125194400-125196000	Enhancers	Osteobl	bone
18	chr8:125194400-125202200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:125194400-125203200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:125194600-125195600	Weak transcription	Psoas Muscle	Psoas
21	chr8:125194600-125195600	Weak transcription	HSMMtube	muscle
22	chr8:125194600-125196000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:125195200-125195800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:125195200-125196000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:125195200-125196600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links