Variant report

Variant	rs73328395
Chromosome Location	chr8:125074542-125074543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10087218	0.94[ASN][1000 genomes]
rs28413919	0.94[ASN][1000 genomes]
rs28468649	1.00[AMR][1000 genomes]
rs28733843	0.94[ASN][1000 genomes]
rs28758377	0.94[ASN][1000 genomes]
rs34689924	1.00[AMR][1000 genomes]
rs56813553	0.88[ASN][1000 genomes]
rs57265559	0.94[ASN][1000 genomes]
rs57874567	0.94[ASN][1000 genomes]
rs58562578	0.94[ASN][1000 genomes]
rs59645347	0.94[ASN][1000 genomes]
rs60486597	0.94[ASN][1000 genomes]
rs60939722	0.94[ASN][1000 genomes]
rs73328367	0.82[ASN][1000 genomes]
rs73328371	0.82[ASN][1000 genomes]
rs73328390	1.00[ASN][1000 genomes]
rs73328397	1.00[ASN][1000 genomes]
rs73330111	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73330116	0.94[ASN][1000 genomes]
rs73330120	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73330123	0.94[ASN][1000 genomes]
rs73330135	0.94[ASN][1000 genomes]
rs73330139	0.94[ASN][1000 genomes]
rs73330143	0.83[ASN][1000 genomes]
rs73330144	0.94[ASN][1000 genomes]
rs73330146	0.94[ASN][1000 genomes]
rs73330149	0.94[ASN][1000 genomes]
rs73330154	0.94[ASN][1000 genomes]
rs73330160	0.94[ASN][1000 genomes]
rs73330174	0.94[ASN][1000 genomes]
rs73330176	0.94[ASN][1000 genomes]
rs73330180	0.94[ASN][1000 genomes]
rs73330182	0.94[ASN][1000 genomes]
rs73332219	0.94[ASN][1000 genomes]
rs73703924	0.94[ASN][1000 genomes]
rs73703927	0.94[ASN][1000 genomes]
rs73703948	0.94[ASN][1000 genomes]
rs7817061	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6375	chr8:125056543-125087258	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125052600-125083600	Weak transcription	Gastric	stomach
2	chr8:125064400-125078600	Weak transcription	Stomach Mucosa	stomach
3	chr8:125071000-125074800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:125074200-125074800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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