Variant report

Variant	rs73333105
Chromosome Location	chr10:54136045-54136046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55911116	1.00[AMR][1000 genomes]
rs59411921	1.00[AMR][1000 genomes]
rs59563498	1.00[AMR][1000 genomes]
rs61160703	1.00[AMR][1000 genomes]
rs61276082	1.00[AMR][1000 genomes]
rs7072159	1.00[AMR][1000 genomes]
rs73331289	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73339097	1.00[AMR][1000 genomes]
rs73341105	1.00[AMR][1000 genomes]
rs73343042	1.00[AMR][1000 genomes]
rs74133309	1.00[AMR][1000 genomes]
rs74133310	1.00[AMR][1000 genomes]
rs74133311	1.00[AMR][1000 genomes]
rs74133313	1.00[AMR][1000 genomes]
rs74133314	1.00[AMR][1000 genomes]
rs74133315	1.00[AMR][1000 genomes]
rs74133318	1.00[AMR][1000 genomes]
rs74135373	1.00[AMR][1000 genomes]
rs74135375	1.00[AMR][1000 genomes]
rs74135378	1.00[AMR][1000 genomes]
rs74135379	1.00[AMR][1000 genomes]
rs74135381	1.00[AMR][1000 genomes]
rs74135382	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1054951	chr10:54115222-54175982	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54134800-54136200	Enhancers	Pancreas	Pancrea
2	chr10:54135800-54136800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:54135800-54137200	Enhancers	Fetal Intestine Large	intestine
4	chr10:54135800-54137200	Enhancers	Fetal Intestine Small	intestine
5	chr10:54136000-54136200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:54136000-54136200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:54136000-54136200	Flanking Active TSS	HepG2	liver
8	chr10:54136000-54136400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:54136000-54136600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:54136000-54136800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:54136000-54137000	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:54136000-54137200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:54136000-54137400	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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