Variant report

Variant	rs73339097
Chromosome Location	chr10:54254156-54254157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55911116	1.00[AMR][1000 genomes]
rs59563498	1.00[AMR][1000 genomes]
rs61160703	1.00[AMR][1000 genomes]
rs73331289	1.00[AMR][1000 genomes]
rs73333105	1.00[AMR][1000 genomes]
rs73341105	1.00[AMR][1000 genomes]
rs73343042	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133309	1.00[AMR][1000 genomes]
rs74133310	1.00[AMR][1000 genomes]
rs74133311	1.00[AMR][1000 genomes]
rs74133313	1.00[AMR][1000 genomes]
rs74133314	1.00[AMR][1000 genomes]
rs74133315	1.00[AMR][1000 genomes]
rs74133318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895401	chr10:54231238-54530636	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54250000-54267800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:54253800-54254200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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