Variant report

Variant	rs73333682
Chromosome Location	chr8:123925156-123925157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:123906451..123909420-chr8:123921962..123925606,3	MCF-7	breast:
2	chr8:123923999..123926161-chr8:123927177..123930133,2	MCF-7	breast:
3	chr8:123792372..123796159-chr8:123924082..123926673,3	MCF-7	breast:
4	chr8:123923582..123928178-chr8:123929053..123932877,4	K562	blood:
5	chr8:123883908..123885684-chr8:123924078..123925892,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272043	Chromatin interaction
ENSG00000272384	Chromatin interaction
ENSG00000178764	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16897633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:123889200-123931200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:123897200-123928200	Weak transcription	Spleen	Spleen
3	chr8:123900400-123928200	Weak transcription	Pancreas	Pancrea
4	chr8:123904400-123931200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:123906400-123928200	Weak transcription	Aorta	Aorta
6	chr8:123907800-123926400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:123908400-123929200	Weak transcription	HSMMtube	muscle
8	chr8:123910200-123926000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:123914000-123927600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:123914000-123931200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:123914000-123963400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:123914600-123931200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:123915800-123926400	Weak transcription	Liver	Liver
14	chr8:123916000-123925800	Weak transcription	Right Atrium	heart
15	chr8:123916800-123931200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:123916800-123963600	Weak transcription	Fetal Intestine Large	intestine
17	chr8:123917000-123930400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr8:123917000-123930600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:123917800-123925600	Weak transcription	Brain Hippocampus Middle	brain
20	chr8:123917800-123929600	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr8:123918000-123930800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:123918200-123927800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:123918200-123930600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr8:123918200-123963800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:123919000-123930000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:123920400-123926000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr8:123920400-123927600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:123920400-123927800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:123920800-123930200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:123921600-123929600	Strong transcription	Primary T cells from cord blood	blood
31	chr8:123922200-123927200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:123922200-123930200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr8:123922600-123925400	Weak transcription	Brain Substantia Nigra	brain
34	chr8:123922600-123925800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:123922600-123929400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr8:123922800-123925800	Weak transcription	Brain Germinal Matrix	brain
37	chr8:123922800-123927200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:123922800-123927800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr8:123922800-123928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:123922800-123928200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr8:123922800-123928200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr8:123922800-123928400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:123922800-123938800	Weak transcription	Fetal Kidney	kidney
44	chr8:123922800-123943600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:123923000-123927800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:123923000-123928000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:123923000-123929000	Weak transcription	GM12878-XiMat	blood
48	chr8:123923000-123929600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr8:123923000-123931000	Weak transcription	Lung	lung
50	chr8:123923200-123928000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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