Variant report

Variant	rs73333742
Chromosome Location	chr8:124773833-124773834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124768308..124770541-chr8:124771311..124773902,2	MCF-7	breast:
2	chr8:124745024..124747551-chr8:124772382..124774109,2	MCF-7	breast:
3	chr8:124474785..124475733-chr8:124773713..124774708,2	MCF-7	breast:
4	chr8:124640436..124642516-chr8:124772118..124774923,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10088262	0.83[ASN][1000 genomes]
rs10099401	0.86[ASN][1000 genomes]
rs10429369	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11785018	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11986791	0.91[EUR][1000 genomes]
rs12546891	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12550235	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13253599	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13261392	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13275308	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13278088	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13278192	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16898871	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1835691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1966620	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2272683	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34253744	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34354351	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34850344	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35420592	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4870867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4871414	0.90[EUR][1000 genomes]
rs4871415	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6470186	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66515434	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67139073	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67237665	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6985019	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6986269	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6988602	0.92[EUR][1000 genomes]
rs6998271	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7004482	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7012004	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7014688	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017174	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73337418	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7827025	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7846164	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9297674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9297675	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124762200-124775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124767400-124775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:124767800-124778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:124768600-124774200	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:124770200-124775800	Enhancers	Fetal Intestine Large	intestine
6	chr8:124770200-124776200	Enhancers	Fetal Intestine Small	intestine
7	chr8:124770400-124774600	Enhancers	Duodenum Mucosa	Duodenum
8	chr8:124770600-124780000	Weak transcription	Pancreas	Pancrea
9	chr8:124770800-124775400	Weak transcription	Liver	Liver
10	chr8:124771800-124774000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:124772200-124774800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:124772600-124775200	Enhancers	Fetal Heart	heart
13	chr8:124773000-124774000	Enhancers	Rectal Smooth Muscle	rectum
14	chr8:124773000-124774800	Enhancers	Fetal Lung	lung
15	chr8:124773000-124775000	Enhancers	HUVEC	blood vessel
16	chr8:124773000-124775600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:124773200-124774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:124773200-124776000	Enhancers	HepG2	liver
19	chr8:124773400-124775200	Weak transcription	NHEK	skin
20	chr8:124773400-124775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:124773600-124774600	Weak transcription	Small Intestine	intestine
22	chr8:124773600-124775400	Weak transcription	Osteobl	bone
23	chr8:124773600-124778200	Weak transcription	K562	blood

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