Variant report

Variant	rs9297674
Chromosome Location	chr8:124762705-124762706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124761796..124762794-chr8:124778146..124779071,2	MCF-7	breast:
2	chr8:124762529..124765233-chr8:124782573..124785539,2	MCF-7	breast:
3	chr8:124762298..124765982-chr8:124768929..124771598,3	MCF-7	breast:
4	chr8:124754400..124756942-chr8:124762705..124764664,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10088262	0.87[ASN][1000 genomes]
rs10099401	0.90[ASN][1000 genomes]
rs10429369	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11785018	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11986791	0.90[EUR][1000 genomes]
rs12546891	0.92[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12550235	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12682209	0.83[ASN][1000 genomes]
rs13253599	0.92[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13261392	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13275308	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13278088	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13278192	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16898871	0.92[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1835691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1966620	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2272683	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34253744	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34354351	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34850344	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35420592	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4870867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871414	0.89[EUR][1000 genomes]
rs4871415	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6470186	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66515434	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67139073	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67237665	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6985019	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6986269	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6988602	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs6998271	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7004482	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7012004	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7014688	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7017174	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73333742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73337418	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7827025	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7846164	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9297675	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124746800-124763600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:124757800-124764600	Weak transcription	Small Intestine	intestine
3	chr8:124759200-124763200	Enhancers	Fetal Intestine Large	intestine
4	chr8:124759600-124764200	Enhancers	Fetal Intestine Small	intestine
5	chr8:124760400-124766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:124760800-124763400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:124761200-124762800	Enhancers	Duodenum Mucosa	Duodenum
8	chr8:124761800-124763400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:124762000-124766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:124762200-124775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:124762400-124762800	Enhancers	A549	lung
12	chr8:124762600-124763200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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