Variant report

Variant	rs12682209
Chromosome Location	chr8:124767441-124767442
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10088262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10099401	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10429369	0.87[ASN][1000 genomes]
rs11785018	0.88[ASN][1000 genomes]
rs12334564	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12541177	0.80[AMR][1000 genomes]
rs13270541	0.80[AMR][1000 genomes]
rs1367829	0.80[AMR][1000 genomes]
rs1835691	0.87[ASN][1000 genomes]
rs34253744	0.87[ASN][1000 genomes]
rs34354351	0.84[ASN][1000 genomes]
rs34850344	0.86[ASN][1000 genomes]
rs4870867	0.85[ASN][1000 genomes]
rs6990565	0.80[AMR][1000 genomes]
rs7014688	0.85[ASN][1000 genomes]
rs7015861	0.80[AMR][1000 genomes]
rs7017174	0.88[ASN][1000 genomes]
rs9297674	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv6373	chr8:124741567-124786609	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124762200-124775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:124765600-124768000	ZNF genes & repeats	Fetal Intestine Small	intestine
3	chr8:124766400-124767600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:124766400-124767800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:124766400-124767800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:124767400-124767600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:124767400-124767800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:124767400-124768000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:124767400-124768000	Enhancers	HepG2	liver
10	chr8:124767400-124775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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