Variant report

Variant	rs1367829
Chromosome Location	chr8:124797135-124797136
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124794682..124797356-chr8:125451063..125452586,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10087476	0.91[ASN][1000 genomes]
rs10088262	0.80[AMR][1000 genomes]
rs10102074	0.94[ASN][1000 genomes]
rs10481071	0.91[ASN][1000 genomes]
rs10481072	0.91[ASN][1000 genomes]
rs10481073	0.91[ASN][1000 genomes]
rs10481151	0.91[ASN][1000 genomes]
rs11986791	0.93[ASN][1000 genomes]
rs12334564	0.86[AMR][1000 genomes]
rs12541177	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12546891	0.81[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12549683	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12682209	0.80[AMR][1000 genomes]
rs13253599	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs13261392	0.81[ASN][1000 genomes]
rs13270541	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13278088	0.91[ASN][1000 genomes]
rs16898871	0.86[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1966620	0.91[ASN][1000 genomes]
rs2060112	0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2272683	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2385515	0.91[ASN][1000 genomes]
rs2385516	0.89[ASN][1000 genomes]
rs28495871	0.91[ASN][1000 genomes]
rs3911939	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4871414	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4871415	0.86[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs60068098	0.89[ASN][1000 genomes]
rs6470186	0.85[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs66474276	0.98[ASN][1000 genomes]
rs66515434	0.91[ASN][1000 genomes]
rs67139073	0.91[ASN][1000 genomes]
rs67237665	0.93[ASN][1000 genomes]
rs67958403	0.98[ASN][1000 genomes]
rs6985019	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6986384	0.91[ASN][1000 genomes]
rs6988602	0.85[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6990565	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6998271	0.90[ASN][1000 genomes]
rs7012004	0.91[ASN][1000 genomes]
rs7015861	0.94[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715071	0.83[ASN][1000 genomes]
rs72715072	0.84[ASN][1000 genomes]
rs73337418	0.91[ASN][1000 genomes]
rs73337464	0.91[ASN][1000 genomes]
rs73337467	0.91[ASN][1000 genomes]
rs73337469	0.91[ASN][1000 genomes]
rs7815695	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7827025	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7827665	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7828192	0.81[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7833650	0.88[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7846164	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs874205	0.91[ASN][1000 genomes]
rs874206	0.91[ASN][1000 genomes]
rs874207	0.91[ASN][1000 genomes]
rs9297675	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9297676	0.91[ASN][1000 genomes]
rs9656947	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs9918907	0.81[ASW][hapmap];0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124781800-124811200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:124782200-124807800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:124782800-124797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:124783600-124797400	Weak transcription	Right Ventricle	heart
5	chr8:124783600-124808000	Weak transcription	Fetal Heart	heart
6	chr8:124785400-124815000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:124785600-124815000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr8:124785800-124829000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr8:124786000-124825200	Strong transcription	Fetal Thymus	thymus
10	chr8:124786200-124803000	Strong transcription	HMEC	breast
11	chr8:124786200-124814400	Strong transcription	HSMM	muscle
12	chr8:124786200-124815200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:124786200-124815400	Strong transcription	Dnd41	blood
14	chr8:124786200-124825200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:124786400-124805400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:124786400-124813800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:124786400-124815000	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:124786400-124815200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr8:124786400-124827200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:124786800-124801200	Strong transcription	HepG2	liver
21	chr8:124786800-124814600	Strong transcription	Placenta	Placenta
22	chr8:124787000-124813800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:124787000-124816400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:124787000-124822800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:124787000-124827000	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr8:124787400-124814400	Strong transcription	A549	lung
27	chr8:124787600-124818800	Strong transcription	Liver	Liver
28	chr8:124788800-124797400	Weak transcription	Pancreas	Pancrea
29	chr8:124789000-124802000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:124789200-124797800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:124789200-124824600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:124789400-124814800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr8:124789400-124821600	Weak transcription	Stomach Mucosa	stomach
34	chr8:124789400-124825200	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr8:124789600-124811400	Strong transcription	Fetal Lung	lung
36	chr8:124789800-124801600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:124789800-124827400	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr8:124790000-124804000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:124790000-124827800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:124790200-124828600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:124790400-124807000	Strong transcription	NHDF-Ad	bronchial
42	chr8:124790600-124814800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:124790800-124800800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:124790800-124804200	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr8:124790800-124806800	Strong transcription	NH-A	brain
46	chr8:124790800-124813400	Strong transcription	HUVEC	blood vessel
47	chr8:124790800-124814400	Strong transcription	Osteobl	bone
48	chr8:124790800-124815800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr8:124790800-124825200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:124791000-124802000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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