Variant report

Variant	rs9297676
Chromosome Location	chr8:124830830-124830831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124829200..124831178-chr8:124838352..124840384,2	K562	blood:
2	chr8:124830047..124831853-chr8:125435986..125438838,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10087476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102074	0.88[ASN][1000 genomes]
rs10481071	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10481072	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10481073	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10481151	0.98[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11986791	0.98[ASN][1000 genomes]
rs12541177	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs12546891	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12549683	0.90[ASN][1000 genomes]
rs13253599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13261392	0.86[ASN][1000 genomes]
rs13270541	0.91[ASN][1000 genomes]
rs13278088	0.99[ASN][1000 genomes]
rs1367829	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs16898871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1966620	0.96[ASN][1000 genomes]
rs2060112	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2272683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2385515	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28495871	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3911939	0.93[ASN][1000 genomes]
rs4870869	0.81[ASN][1000 genomes]
rs4871414	1.00[ASN][1000 genomes]
rs4871415	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs60068098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs66474276	0.93[ASN][1000 genomes]
rs66515434	1.00[ASN][1000 genomes]
rs67139073	1.00[ASN][1000 genomes]
rs67237665	0.98[ASN][1000 genomes]
rs67958403	0.93[ASN][1000 genomes]
rs6985019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[ASN][1000 genomes]
rs6986384	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6988602	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6998271	0.98[ASN][1000 genomes]
rs7012004	0.97[ASN][1000 genomes]
rs7015861	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs73337418	1.00[ASN][1000 genomes]
rs73337464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337467	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73337469	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815695	0.83[ASN][1000 genomes]
rs7827025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7827665	0.87[ASN][1000 genomes]
rs7828192	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7833650	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs7846164	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs874205	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874206	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874207	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9918907	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124808400-124831600	Weak transcription	Esophagus	oesophagus
2	chr8:124809800-124833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:124810600-124831600	Weak transcription	Gastric	stomach
4	chr8:124813400-124837600	Weak transcription	Brain Substantia Nigra	brain
5	chr8:124814800-124837400	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:124819600-124836800	Weak transcription	Fetal Heart	heart
7	chr8:124820600-124837600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:124823000-124835400	Weak transcription	A549	lung
9	chr8:124823000-124836000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:124823200-124838000	Weak transcription	Right Ventricle	heart
11	chr8:124824000-124837800	Weak transcription	Brain Angular Gyrus	brain
12	chr8:124824200-124835400	Weak transcription	Brain Anterior Caudate	brain
13	chr8:124824200-124836600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:124824400-124831600	Weak transcription	Lung	lung
15	chr8:124824400-124833600	Weak transcription	Aorta	Aorta
16	chr8:124824400-124834200	Weak transcription	Fetal Intestine Small	intestine
17	chr8:124824400-124838000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr8:124825200-124835600	Weak transcription	Placenta	Placenta
19	chr8:124825200-124836000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:124825200-124837000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:124825200-124837600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:124827000-124835400	Weak transcription	HUVEC	blood vessel
23	chr8:124828200-124836800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:124828400-124831600	Weak transcription	NHEK	skin
25	chr8:124828600-124831600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:124828600-124835600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:124828600-124835800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr8:124828600-124836400	Weak transcription	Fetal Muscle Leg	muscle
29	chr8:124828800-124837600	Weak transcription	Left Ventricle	heart
30	chr8:124829200-124831000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr8:124829400-124831800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr8:124829400-124845000	Weak transcription	NHLF	lung
33	chr8:124829800-124832000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:124829800-124844000	Weak transcription	Fetal Lung	lung
35	chr8:124830000-124831200	Weak transcription	NHDF-Ad	bronchial
36	chr8:124830000-124831800	Enhancers	Ovary	ovary
37	chr8:124830000-124832800	Weak transcription	HSMM	muscle
38	chr8:124830000-124835600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:124830000-124835800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:124830600-124835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:124830800-124831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:124830800-124831200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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