Variant report

Variant	rs3911939
Chromosome Location	chr8:124793744-124793745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124792618..124794440-chr8:125383847..125385509,2	MCF-7	breast:
2	chr8:124792839..124794847-chr8:124797341..124799697,2	K562	blood:
3	chr8:124793347..124796014-chr8:124797395..124799697,4	K562	blood:

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10087476	0.93[ASN][1000 genomes]
rs10102074	0.81[ASN][1000 genomes]
rs10481071	0.93[ASN][1000 genomes]
rs10481072	0.93[ASN][1000 genomes]
rs10481073	0.93[ASN][1000 genomes]
rs10481151	0.92[ASN][1000 genomes]
rs11986791	0.94[ASN][1000 genomes]
rs12541177	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12546891	0.94[ASN][1000 genomes]
rs12549683	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13253599	0.93[ASN][1000 genomes]
rs13261392	0.82[ASN][1000 genomes]
rs13270541	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13278088	0.92[ASN][1000 genomes]
rs1367829	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16898871	0.88[ASN][1000 genomes]
rs1966620	0.95[ASN][1000 genomes]
rs2060112	0.91[ASN][1000 genomes]
rs2272683	0.92[ASN][1000 genomes]
rs2385515	0.93[ASN][1000 genomes]
rs2385516	0.91[ASN][1000 genomes]
rs28495871	0.93[ASN][1000 genomes]
rs4871414	0.93[ASN][1000 genomes]
rs4871415	0.88[ASN][1000 genomes]
rs60068098	0.91[ASN][1000 genomes]
rs6470186	0.91[ASN][1000 genomes]
rs66474276	0.86[ASN][1000 genomes]
rs66515434	0.93[ASN][1000 genomes]
rs67139073	0.93[ASN][1000 genomes]
rs67237665	0.94[ASN][1000 genomes]
rs67958403	0.86[ASN][1000 genomes]
rs6985019	0.92[ASN][1000 genomes]
rs6986384	0.93[ASN][1000 genomes]
rs6988602	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6990565	0.88[AMR][1000 genomes]
rs6998271	0.91[ASN][1000 genomes]
rs7012004	0.93[ASN][1000 genomes]
rs7015861	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73337418	0.93[ASN][1000 genomes]
rs73337464	0.93[ASN][1000 genomes]
rs73337467	0.93[ASN][1000 genomes]
rs73337469	0.93[ASN][1000 genomes]
rs7815695	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7827025	0.88[ASN][1000 genomes]
rs7827665	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7828192	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7833650	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs874205	0.93[ASN][1000 genomes]
rs874206	0.93[ASN][1000 genomes]
rs874207	0.93[ASN][1000 genomes]
rs9297675	0.88[ASN][1000 genomes]
rs9297676	0.93[ASN][1000 genomes]
rs9918907	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124781800-124796000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:124781800-124811200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:124782200-124807800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:124782600-124795800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:124782800-124797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:124783400-124796000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:124783600-124794000	Weak transcription	Psoas Muscle	Psoas
8	chr8:124783600-124795200	Weak transcription	Aorta	Aorta
9	chr8:124783600-124797400	Weak transcription	Right Ventricle	heart
10	chr8:124783600-124808000	Weak transcription	Fetal Heart	heart
11	chr8:124785400-124815000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:124785600-124815000	Strong transcription	Duodenum Mucosa	Duodenum
13	chr8:124785800-124829000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:124786000-124825200	Strong transcription	Fetal Thymus	thymus
15	chr8:124786200-124803000	Strong transcription	HMEC	breast
16	chr8:124786200-124814400	Strong transcription	HSMM	muscle
17	chr8:124786200-124815200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:124786200-124815400	Strong transcription	Dnd41	blood
19	chr8:124786200-124825200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:124786400-124796200	Strong transcription	K562	blood
21	chr8:124786400-124805400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:124786400-124813800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:124786400-124815000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:124786400-124815200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr8:124786400-124827200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:124786800-124801200	Strong transcription	HepG2	liver
27	chr8:124786800-124814600	Strong transcription	Placenta	Placenta
28	chr8:124787000-124813800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:124787000-124816400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:124787000-124822800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:124787000-124827000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:124787400-124814400	Strong transcription	A549	lung
33	chr8:124787600-124818800	Strong transcription	Liver	Liver
34	chr8:124787800-124794000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr8:124787800-124796000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:124788600-124796000	Weak transcription	Fetal Brain Male	brain
37	chr8:124788800-124797400	Weak transcription	Pancreas	Pancrea
38	chr8:124789000-124802000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr8:124789200-124793800	Weak transcription	Spleen	Spleen
40	chr8:124789200-124794800	Strong transcription	GM12878-XiMat	blood
41	chr8:124789200-124796000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr8:124789200-124796200	Weak transcription	Small Intestine	intestine
43	chr8:124789200-124797800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr8:124789200-124824600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:124789400-124793800	Weak transcription	Fetal Stomach	stomach
46	chr8:124789400-124796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr8:124789400-124796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:124789400-124796000	Weak transcription	Gastric	stomach
49	chr8:124789400-124814800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr8:124789400-124821600	Weak transcription	Stomach Mucosa	stomach

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