Variant report

Variant	rs10481072
Chromosome Location	chr8:124831671-124831672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124830047..124831853-chr8:125435986..125438838,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10087476	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10102074	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10481071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11986791	0.98[ASN][1000 genomes]
rs12541177	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs12546891	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12549683	0.90[ASN][1000 genomes]
rs13253599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13261392	0.86[ASN][1000 genomes]
rs13270541	0.91[ASN][1000 genomes]
rs13278088	0.99[ASN][1000 genomes]
rs1367829	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs16898871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1966620	0.96[ASN][1000 genomes]
rs2060112	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2272683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2385515	1.00[ASN][1000 genomes]
rs2385516	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2385521	0.85[CHB][hapmap]
rs28495871	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3911939	0.93[ASN][1000 genomes]
rs4870869	0.81[ASN][1000 genomes]
rs4871414	1.00[ASN][1000 genomes]
rs4871415	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs60068098	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6470186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs66474276	0.93[ASN][1000 genomes]
rs66515434	1.00[ASN][1000 genomes]
rs67139073	1.00[ASN][1000 genomes]
rs67237665	0.98[ASN][1000 genomes]
rs67958403	0.93[ASN][1000 genomes]
rs6985019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[ASN][1000 genomes]
rs6986384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988602	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs6998271	0.98[ASN][1000 genomes]
rs7012004	0.97[ASN][1000 genomes]
rs7015861	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs73337418	1.00[ASN][1000 genomes]
rs73337464	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73337467	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73337469	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7815695	0.83[ASN][1000 genomes]
rs7827025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7827665	0.87[ASN][1000 genomes]
rs7828192	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7833650	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs7846164	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs874205	1.00[ASN][1000 genomes]
rs874206	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs874207	1.00[ASN][1000 genomes]
rs9297675	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9297676	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9918907	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124809800-124833600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:124813400-124837600	Weak transcription	Brain Substantia Nigra	brain
3	chr8:124814800-124837400	Weak transcription	Brain Hippocampus Middle	brain
4	chr8:124819600-124836800	Weak transcription	Fetal Heart	heart
5	chr8:124820600-124837600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:124823000-124835400	Weak transcription	A549	lung
7	chr8:124823000-124836000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:124823200-124838000	Weak transcription	Right Ventricle	heart
9	chr8:124824000-124837800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:124824200-124835400	Weak transcription	Brain Anterior Caudate	brain
11	chr8:124824200-124836600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:124824400-124833600	Weak transcription	Aorta	Aorta
13	chr8:124824400-124834200	Weak transcription	Fetal Intestine Small	intestine
14	chr8:124824400-124838000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:124825200-124835600	Weak transcription	Placenta	Placenta
16	chr8:124825200-124836000	Weak transcription	Fetal Intestine Large	intestine
17	chr8:124825200-124837000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:124825200-124837600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:124827000-124835400	Weak transcription	HUVEC	blood vessel
20	chr8:124828200-124836800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:124828600-124835600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:124828600-124835800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr8:124828600-124836400	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:124828800-124837600	Weak transcription	Left Ventricle	heart
25	chr8:124829400-124831800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:124829400-124845000	Weak transcription	NHLF	lung
27	chr8:124829800-124832000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:124829800-124844000	Weak transcription	Fetal Lung	lung
29	chr8:124830000-124831800	Enhancers	Ovary	ovary
30	chr8:124830000-124832800	Weak transcription	HSMM	muscle
31	chr8:124830000-124835600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:124830000-124835800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:124830600-124835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:124831200-124831800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:124831200-124831800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:124831600-124831800	Enhancers	Esophagus	oesophagus
37	chr8:124831600-124831800	Enhancers	Gastric	stomach
38	chr8:124831600-124831800	Active TSS	Lung	lung

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