Variant report

Variant	rs72715071
Chromosome Location	chr8:124849498-124849499
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124845856..124848034-chr8:124848180..124850784,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10102074	0.81[ASN][1000 genomes]
rs12541177	0.82[ASN][1000 genomes]
rs12549683	0.82[ASN][1000 genomes]
rs13270541	0.83[ASN][1000 genomes]
rs1367829	0.83[ASN][1000 genomes]
rs4870869	0.82[ASN][1000 genomes]
rs66474276	0.85[ASN][1000 genomes]
rs67958403	0.85[ASN][1000 genomes]
rs7004647	0.81[ASN][1000 genomes]
rs7015861	0.83[ASN][1000 genomes]
rs72715072	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7833650	0.84[ASN][1000 genomes]
rs9918907	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831451	chr8:124710946-124885148	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124836400-124850000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:124844800-124850200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:124845800-124850000	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:124845800-124850000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:124846200-124849800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:124846200-124850000	Weak transcription	Fetal Lung	lung
7	chr8:124847400-124850200	Weak transcription	Esophagus	oesophagus
8	chr8:124848400-124850200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:124849200-124850000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:124849200-124850200	Enhancers	NHDF-Ad	bronchial
11	chr8:124849400-124849600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:124849400-124850000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:124849400-124850200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:124849400-124850200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:124849400-124850200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:124849400-124850200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:124849400-124850200	Enhancers	NHLF	lung
18	chr8:124849400-124850200	Enhancers	Osteobl	bone
19	chr8:124849400-124850400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:124849400-124850400	Enhancers	Ovary	ovary
21	chr8:124849400-124853400	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links