Variant report

Variant	rs73341961
Chromosome Location	chr21:15826597-15826598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15825624..15828360-chr21:15829254..15832008,4	K562	blood:
2	chr21:15825365..15827062-chr21:16144485..16147042,2	K562	blood:
3	chr21:15759229..15762199-chr21:15825176..15826732,2	K562	blood:

Variant related genes	Relation type
ENSG00000225502	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57440368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57489910	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62229752	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv966029	chr21:15818808-15833739	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15823800-15827400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr21:15823800-15828000	Flanking Active TSS	K562	blood
3	chr21:15824000-15828000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr21:15824000-15828200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr21:15824000-15828600	Enhancers	Primary hematopoietic stem cells	blood
6	chr21:15824200-15828200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:15825000-15827600	Flanking Active TSS	GM12878-XiMat	blood
8	chr21:15825400-15826600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr21:15825600-15826800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr21:15826000-15827000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr21:15826200-15827400	Enhancers	Fetal Intestine Large	intestine
12	chr21:15826200-15827400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr21:15826200-15827400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr21:15826400-15826800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr21:15826400-15827000	Enhancers	Fetal Intestine Small	intestine
16	chr21:15826400-15827000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr21:15826400-15827200	Enhancers	Fetal Stomach	stomach
18	chr21:15826400-15827400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr21:15826400-15827400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr21:15826400-15827400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr21:15826400-15827400	Enhancers	Stomach Mucosa	stomach

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