Variant report

Variant	rs73342267
Chromosome Location	chr14:81635735-81635736
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81635245..81640402-chr14:81683793..81689293,8	MCF-7	breast:
2	chr14:81447196..81448849-chr14:81635444..81638287,2	MCF-7	breast:
3	chr14:81635464..81638481-chr14:81684307..81689009,9	K562	blood:
4	chr14:81634129..81641173-chr14:81683190..81688873,17	MCF-7	breast:
5	chr14:81635464..81641822-chr14:81682247..81689009,10	K562	blood:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction
ENSG00000258915	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3210528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55912375	1.00[AMR][1000 genomes]
rs56029379	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56939581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57616891	1.00[AMR][1000 genomes]
rs60127836	1.00[AMR][1000 genomes]
rs60303104	1.00[AMR][1000 genomes]
rs60359782	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61159018	0.81[AMR][1000 genomes]
rs61175070	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73342260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344360	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73344387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73346388	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74067426	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81629200-81636200	Weak transcription	Aorta	Aorta
3	chr14:81630000-81636000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr14:81631000-81635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:81631000-81635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:81631000-81635800	Weak transcription	Fetal Heart	heart
7	chr14:81631000-81636000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:81631000-81636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:81631000-81636000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:81631000-81636000	Weak transcription	HMEC	breast
11	chr14:81631200-81636000	Weak transcription	Left Ventricle	heart
12	chr14:81631800-81636200	Weak transcription	K562	blood
13	chr14:81633400-81636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:81633400-81636000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:81634600-81635800	Enhancers	HepG2	liver
16	chr14:81634800-81635800	Enhancers	Primary T cells from cord blood	blood
17	chr14:81634800-81635800	Enhancers	Dnd41	blood
18	chr14:81635000-81635800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:81635000-81636000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr14:81635000-81636000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr14:81635000-81636000	Enhancers	Fetal Thymus	thymus
22	chr14:81635200-81636000	Enhancers	Primary hematopoietic stem cells	blood
23	chr14:81635200-81636000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr14:81635600-81635800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr14:81635600-81635800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:81635600-81635800	Enhancers	Primary B cells from cord blood	blood
27	chr14:81635600-81635800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr14:81635600-81635800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:81635600-81635800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:81635600-81635800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr14:81635600-81635800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:81635600-81635800	Enhancers	Adipose Nuclei	Adipose
33	chr14:81635600-81635800	Enhancers	Liver	Liver
34	chr14:81635600-81635800	Enhancers	Brain Cingulate Gyrus	brain
35	chr14:81635600-81635800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr14:81635600-81635800	Enhancers	Brain Substantia Nigra	brain
37	chr14:81635600-81635800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr14:81635600-81635800	Enhancers	Fetal Kidney	kidney
39	chr14:81635600-81635800	Enhancers	Fetal Lung	lung
40	chr14:81635600-81635800	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr14:81635600-81635800	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr14:81635600-81635800	Enhancers	GM12878-XiMat	blood
43	chr14:81635600-81636000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr14:81635600-81636000	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr14:81635600-81636000	Enhancers	Primary T cells fromperipheralblood	blood
46	chr14:81635600-81636000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr14:81635600-81636000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:81635600-81636000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr14:81635600-81636000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:81635600-81636000	Enhancers	Brain Hippocampus Middle	brain

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