Variant report

Variant	rs73342332
Chromosome Location	chr8:125157503-125157504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57354698	0.89[AFR][1000 genomes]
rs59376438	1.00[AFR][1000 genomes]
rs73334210	0.90[AFR][1000 genomes]
rs73334212	1.00[AFR][1000 genomes]
rs73334224	0.90[AFR][1000 genomes]
rs73334231	1.00[AFR][1000 genomes]
rs73334234	0.90[AFR][1000 genomes]
rs73334252	1.00[AFR][1000 genomes]
rs73334253	1.00[AFR][1000 genomes]
rs73334254	1.00[AFR][1000 genomes]
rs73342330	1.00[AFR][1000 genomes]
rs73342344	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv831452	chr8:125099708-125259926	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125150400-125165600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:125151200-125157800	Weak transcription	Stomach Mucosa	stomach
3	chr8:125151200-125160000	Weak transcription	Fetal Intestine Small	intestine
4	chr8:125151400-125158000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:125151400-125159200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:125153800-125158800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:125154000-125159200	Weak transcription	A549	lung
8	chr8:125154200-125157600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:125154200-125157600	Weak transcription	HUVEC	blood vessel
10	chr8:125154200-125159200	Weak transcription	NH-A	brain
11	chr8:125154200-125165600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:125154400-125159800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:125155200-125159400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:125156600-125157600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:125156800-125157800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:125157000-125157600	Weak transcription	Spleen	Spleen
17	chr8:125157000-125158200	Enhancers	Pancreas	Pancrea
18	chr8:125157400-125157600	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links