Variant report

Variant	rs7334437
Chromosome Location	chr13:30700703-30700704
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30687723..30690408-chr13:30699734..30701487,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4769028	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769810	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533910	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533937	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs549744	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs584999	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585049	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66587785	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7334284	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984451	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8000970	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506264	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9506265	0.82[EUR][1000 genomes]
rs9506266	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508639	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508641	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508642	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9508643	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508646	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9508647	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30694400-30707000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30695000-30701000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr13:30696400-30707000	Weak transcription	Thymus	Thymus
4	chr13:30696600-30702800	Weak transcription	Fetal Thymus	thymus
5	chr13:30697800-30702200	Enhancers	Colon Smooth Muscle	Colon
6	chr13:30697800-30702600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:30698200-30701800	Enhancers	Stomach Smooth Muscle	stomach
8	chr13:30698200-30702400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:30698400-30701600	Enhancers	Rectal Smooth Muscle	rectum
10	chr13:30698400-30701800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:30699400-30700800	Enhancers	HMEC	breast
12	chr13:30699400-30701400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:30699400-30701400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:30699400-30701600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:30699400-30701800	Enhancers	NHLF	lung
16	chr13:30699400-30701800	Enhancers	Osteobl	bone
17	chr13:30699400-30702000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:30699600-30700800	Enhancers	NHEK	skin
19	chr13:30699600-30701400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:30699600-30701400	Enhancers	NHDF-Ad	bronchial
21	chr13:30699600-30701600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:30699800-30701000	Weak transcription	Gastric	stomach
23	chr13:30700000-30700800	Weak transcription	Stomach Mucosa	stomach
24	chr13:30700200-30700800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr13:30700200-30707000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:30700200-30708000	Weak transcription	NH-A	brain
27	chr13:30700200-30717200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:30700400-30701200	Enhancers	Ovary	ovary
29	chr13:30700400-30702000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:30700600-30700800	Enhancers	Brain Substantia Nigra	brain
31	chr13:30700600-30700800	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr13:30700600-30701400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr13:30700600-30702200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links