Variant report

Variant	rs9508641
Chromosome Location	chr13:30692633-30692634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30690726..30692990-chr13:30715205..30717386,2	MCF-7	breast:
2	chr13:30687700..30689739-chr13:30690747..30693968,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4769028	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769808	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769810	0.95[ASN][1000 genomes]
rs533910	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs533937	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs549744	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs584999	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs585049	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66587785	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7334284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7334437	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7984451	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8000970	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9506264	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9506266	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508639	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9508642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9508643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508644	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508646	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9508647	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30689600-30692800	Weak transcription	Fetal Thymus	thymus
2	chr13:30689600-30692800	Weak transcription	HMEC	breast
3	chr13:30689600-30693000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:30689600-30693000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr13:30689600-30693000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr13:30689600-30693200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr13:30689600-30693200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr13:30689600-30693200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:30689600-30693200	Weak transcription	HSMM	muscle
10	chr13:30689600-30693400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr13:30689600-30693400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr13:30689600-30693400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr13:30689600-30693400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr13:30689600-30693400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr13:30689600-30693400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:30689600-30693400	Weak transcription	Fetal Intestine Small	intestine
17	chr13:30689600-30693400	Weak transcription	HSMMtube	muscle
18	chr13:30689600-30693600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr13:30689600-30693600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr13:30689600-30697400	Weak transcription	Aorta	Aorta
21	chr13:30689600-30697800	Weak transcription	Spleen	Spleen
22	chr13:30689800-30692800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:30689800-30693200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:30689800-30693400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:30689800-30693400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:30689800-30693400	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:30689800-30693800	Weak transcription	Primary B cells from cord blood	blood
28	chr13:30690200-30692800	Weak transcription	NHEK	skin
29	chr13:30690200-30693400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr13:30690200-30693600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr13:30690200-30699800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr13:30690400-30692800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr13:30690400-30693400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:30690800-30693200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:30690800-30693600	Weak transcription	GM12878-XiMat	blood
36	chr13:30691000-30692800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr13:30691200-30699400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr13:30692000-30693000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr13:30692400-30692800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr13:30692400-30692800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr13:30692400-30693400	Enhancers	Primary T cells from cord blood	blood
42	chr13:30692400-30693600	Enhancers	Colon Smooth Muscle	Colon
43	chr13:30692400-30696400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr13:30692400-30696600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr13:30692600-30693400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:30692600-30693400	Enhancers	Dnd41	blood
47	chr13:30692600-30693600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr13:30692600-30693600	Enhancers	Rectal Smooth Muscle	rectum
49	chr13:30692600-30695000	Enhancers	Placenta Amnion	Placenta Amnion
50	chr13:30692600-30695400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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