Variant report

Variant	rs73349018
Chromosome Location	chr8:126534768-126534769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126532844..126534888-chr8:126555754..126558002,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17420217	0.93[EUR][1000 genomes]
rs72645160	0.93[EUR][1000 genomes]
rs72645162	0.93[EUR][1000 genomes]
rs73349020	1.00[EUR][1000 genomes]
rs7824301	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7824310	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7835068	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126525800-126538800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:126526000-126537400	Weak transcription	Fetal Lung	lung
3	chr8:126527000-126538200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:126527600-126537000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:126528000-126537200	Weak transcription	Psoas Muscle	Psoas
6	chr8:126528600-126537000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:126528600-126537000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:126529400-126537000	Weak transcription	Liver	Liver
9	chr8:126532000-126536200	Weak transcription	Hela-S3	cervix
10	chr8:126532000-126537000	Weak transcription	A549	lung
11	chr8:126532000-126537000	Weak transcription	NHEK	skin
12	chr8:126532200-126537000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:126533600-126534800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:126533600-126539000	Weak transcription	Esophagus	oesophagus
15	chr8:126534200-126534800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:126534200-126535400	Enhancers	Ovary	ovary
17	chr8:126534400-126534800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:126534400-126534800	Enhancers	Right Atrium	heart
19	chr8:126534400-126534800	Enhancers	Osteobl	bone
20	chr8:126534400-126535000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr8:126534400-126537000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:126534600-126534800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:126534600-126534800	Enhancers	Fetal Stomach	stomach
24	chr8:126534600-126535000	Enhancers	Adipose Nuclei	Adipose

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