Variant report

Variant	rs7824310
Chromosome Location	chr8:126539458-126539459
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126538306..126540955-chr8:126542807..126544480,2	MCF-7	breast:
2	chr8:126440014..126446143-chr8:126536595..126545632,13	MCF-7	breast:
3	chr8:126510840..126512600-chr8:126537869..126539676,2	MCF-7	breast:
4	chr8:126531941..126534685-chr8:126537935..126540174,2	K562	blood:
5	chr8:126538658..126542290-chr8:126619301..126623874,4	MCF-7	breast:
6	chr8:126539228..126540780-chr8:126558086..126560201,2	MCF-7	breast:
7	chr8:126442607..126446830-chr8:126537822..126540894,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17420217	0.93[EUR][1000 genomes]
rs72645160	0.93[EUR][1000 genomes]
rs72645162	0.93[EUR][1000 genomes]
rs73349018	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73349020	1.00[EUR][1000 genomes]
rs7824301	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7835068	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126535400-126543200	Weak transcription	Ovary	ovary
2	chr8:126537000-126541000	Enhancers	Liver	Liver
3	chr8:126537000-126541200	Enhancers	NHDF-Ad	bronchial
4	chr8:126537000-126541200	Enhancers	NHEK	skin
5	chr8:126537000-126541400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:126537000-126541400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:126537000-126541400	Enhancers	HMEC	breast
8	chr8:126537000-126541400	Enhancers	NH-A	brain
9	chr8:126537000-126541400	Enhancers	NHLF	lung
10	chr8:126537000-126541400	Enhancers	Osteobl	bone
11	chr8:126537000-126541600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:126537000-126541600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:126537000-126541800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr8:126537200-126541200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:126537200-126541200	Enhancers	Adipose Nuclei	Adipose
16	chr8:126537200-126541800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:126537400-126540000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:126537600-126540600	Enhancers	Hela-S3	cervix
19	chr8:126537800-126540000	Weak transcription	Pancreas	Pancrea
20	chr8:126538000-126540000	Weak transcription	HepG2	liver
21	chr8:126538000-126540800	Weak transcription	Fetal Lung	lung
22	chr8:126538200-126540800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr8:126538200-126541200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr8:126538200-126541400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:126538400-126540400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr8:126538400-126540600	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr8:126538400-126540600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:126538600-126541200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:126538800-126539600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr8:126538800-126540200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:126538800-126541200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr8:126538800-126541200	Enhancers	Fetal Muscle Leg	muscle
33	chr8:126538800-126541600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:126538800-126541800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr8:126539000-126540600	Weak transcription	HSMM	muscle
36	chr8:126539000-126541000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr8:126539000-126541200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr8:126539000-126541200	Enhancers	Duodenum Mucosa	Duodenum
39	chr8:126539000-126541800	Enhancers	Placenta	Placenta
40	chr8:126539000-126542000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr8:126539200-126540000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr8:126539200-126540000	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr8:126539200-126540000	Weak transcription	Esophagus	oesophagus
44	chr8:126539200-126540000	Weak transcription	Psoas Muscle	Psoas
45	chr8:126539200-126540000	Weak transcription	Spleen	Spleen
46	chr8:126539200-126540000	Weak transcription	A549	lung
47	chr8:126539200-126540200	Weak transcription	Lung	lung
48	chr8:126539200-126540200	Weak transcription	HSMMtube	muscle
49	chr8:126539200-126540400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:126539200-126540600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links