Variant report

Variant	rs7334904
Chromosome Location	chr13:53850937-53850938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10450827	0.86[AFR][1000 genomes]
rs55915021	0.87[AFR][1000 genomes]
rs57096690	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58598010	0.89[AFR][1000 genomes]
rs60279434	0.87[AFR][1000 genomes]
rs7335176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483518	0.87[AFR][1000 genomes]
rs73483533	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483536	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483541	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483552	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483556	0.93[AFR][1000 genomes]
rs74086926	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74086930	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53849400-53851200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr13:53849600-53851000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr13:53849600-53851000	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
4	chr13:53849600-53851000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr13:53849600-53851200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:53849800-53851400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr13:53850600-53851000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:53850600-53851000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr13:53850600-53851000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr13:53850600-53851000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:53850800-53851000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
12	chr13:53850800-53851000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:53850800-53851200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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