Variant report

Variant	rs73352162
Chromosome Location	chr14:104902479-104902480
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104898141..104899816-chr14:104900937..104903488,2	MCF-7	breast:
2	chr14:104809922..104812049-chr14:104902257..104904031,2	MCF-7	breast:
3	chr14:104902006..104903971-chr14:104906199..104909973,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28498317	1.00[ASN][1000 genomes]
rs28635097	1.00[ASN][1000 genomes]
rs28721875	0.89[ASN][1000 genomes]
rs57778006	1.00[ASN][1000 genomes]
rs73352153	1.00[ASN][1000 genomes]
rs73352160	1.00[ASN][1000 genomes]
rs73354013	1.00[EUR][1000 genomes]
rs73354014	1.00[EUR][1000 genomes]
rs73354017	1.00[EUR][1000 genomes]
rs73354019	1.00[EUR][1000 genomes]
rs73354028	1.00[EUR][1000 genomes]
rs73354032	1.00[EUR][1000 genomes]
rs8008541	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826669	chr14:104554461-105065941	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1049810	chr14:104577600-105060539	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv902362	chr14:104699495-104917657	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1040645	chr14:104757883-104908282	Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542216	chr14:104757883-104908282	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1041266	chr14:104769068-104912436	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv542217	chr14:104769068-104912436	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1043230	chr14:104771655-104912436	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv542218	chr14:104771655-104912436	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
11	esv2751159	chr14:104778024-104986402	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv1043420	chr14:104787551-104908282	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv542219	chr14:104787551-104908282	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1038002	chr14:104787560-104912436	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv542220	chr14:104787560-104912436	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv1054960	chr14:104789101-104915527	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1044069	chr14:104789101-104938308	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	esv2761599	chr14:104789113-105067734	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv566042	chr14:104792254-104937554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv456444	chr14:104792254-104952144	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv566043	chr14:104792254-104952144	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	esv2751160	chr14:104807712-104912955	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	esv2751161	chr14:104807712-104962955	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	esv2830001	chr14:104839816-104937554	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv902368	chr14:104839816-104947517	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv519840	chr14:104884605-104961635	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv902369	chr14:104896538-104983655	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104901200-104904400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr14:104901400-104904800	Enhancers	Lung	lung
3	chr14:104901800-104903200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:104901800-104904400	Enhancers	Spleen	Spleen
5	chr14:104902000-104902600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:104902000-104902600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr14:104902000-104902600	Enhancers	Right Ventricle	heart
8	chr14:104902000-104904000	Enhancers	Fetal Muscle Leg	muscle
9	chr14:104902000-104904200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:104902200-104902600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr14:104902200-104902600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:104902200-104902600	Enhancers	Brain Hippocampus Middle	brain
13	chr14:104902200-104902600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr14:104902200-104902800	Enhancers	Primary hematopoietic stem cells	blood
15	chr14:104902200-104902800	Enhancers	HUVEC	blood vessel
16	chr14:104902200-104903000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:104902200-104903200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr14:104902200-104903200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
19	chr14:104902200-104903200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr14:104902200-104903800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:104902200-104904000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:104902200-104904000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:104902200-104904200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr14:104902200-104904200	Enhancers	Brain Germinal Matrix	brain
25	chr14:104902400-104902600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:104902400-104902600	Enhancers	Brain Anterior Caudate	brain
27	chr14:104902400-104902600	Flanking Active TSS	Colonic Mucosa	Colon
28	chr14:104902400-104902600	Enhancers	Duodenum Mucosa	Duodenum
29	chr14:104902400-104902600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr14:104902400-104902600	Enhancers	Stomach Mucosa	stomach
31	chr14:104902400-104902800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr14:104902400-104902800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr14:104902400-104902800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:104902400-104902800	Active TSS	Colon Smooth Muscle	Colon
35	chr14:104902400-104902800	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr14:104902400-104902800	Flanking Active TSS	Esophagus	oesophagus
37	chr14:104902400-104902800	Bivalent Enhancer	Placenta	Placenta
38	chr14:104902400-104902800	Active TSS	Psoas Muscle	Psoas
39	chr14:104902400-104902800	Active TSS	Right Atrium	heart
40	chr14:104902400-104903000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:104902400-104903000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
42	chr14:104902400-104903000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:104902400-104903000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:104902400-104903000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr14:104902400-104903000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr14:104902400-104903200	Flanking Active TSS	Fetal Lung	lung
47	chr14:104902400-104903200	Flanking Active TSS	Ovary	ovary
48	chr14:104902400-104903200	Flanking Active TSS	Pancreas	Pancrea
49	chr14:104902400-104903200	Active TSS	Rectal Smooth Muscle	rectum
50	chr14:104902400-104903200	Enhancers	NH-A	brain

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