Variant report

Variant	rs73354013
Chromosome Location	chr14:104927571-104927572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104913762..104916000-chr14:104927543..104930360,2	MCF-7	breast:
2	chr14:104915992..104918653-chr14:104925232..104927798,2	MCF-7	breast:
3	chr14:104926023..104927806-chr14:104944745..104946610,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213159	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73352162	1.00[EUR][1000 genomes]
rs73352168	0.83[AFR][1000 genomes]
rs73352170	0.83[AFR][1000 genomes]
rs73354014	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73354017	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73354019	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73354027	0.90[AFR][1000 genomes]
rs73354028	1.00[EUR][1000 genomes]
rs73354032	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826669	chr14:104554461-105065941	Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1049810	chr14:104577600-105060539	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv530812	chr14:104775571-105364883	Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	esv2751159	chr14:104778024-104986402	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1044069	chr14:104789101-104938308	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2761599	chr14:104789113-105067734	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv566042	chr14:104792254-104937554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv456444	chr14:104792254-104952144	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv566043	chr14:104792254-104952144	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv2751161	chr14:104807712-104962955	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv2830001	chr14:104839816-104937554	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv902368	chr14:104839816-104947517	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv519840	chr14:104884605-104961635	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv902369	chr14:104896538-104983655	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv902370	chr14:104907273-104967252	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3427177	chr14:104926923-104928774	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3321890	chr14:104926932-104929780	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104926800-104928000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
2	chr14:104926800-104929600	Enhancers	Fetal Brain Male	brain
3	chr14:104927000-104928400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:104927200-104927600	Flanking Active TSS	Fetal Brain Female	brain
5	chr14:104927200-104927600	Active TSS	Ovary	ovary
6	chr14:104927200-104928000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:104927200-104928200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr14:104927200-104928200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
9	chr14:104927200-104928600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr14:104927200-104928800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr14:104927200-104928800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
12	chr14:104927200-104929000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr14:104927400-104927600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr14:104927400-104927600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr14:104927400-104927600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
16	chr14:104927400-104927600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:104927400-104927600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
18	chr14:104927400-104927600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:104927400-104927600	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
20	chr14:104927400-104927600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:104927400-104927600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:104927400-104927600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr14:104927400-104927600	Flanking Bivalent TSS/Enh	Fetal Lung	lung
24	chr14:104927400-104927600	Enhancers	Left Ventricle	heart
25	chr14:104927400-104927600	Enhancers	Right Ventricle	heart
26	chr14:104927400-104927600	Flanking Active TSS	Spleen	Spleen
27	chr14:104927400-104927800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:104927400-104927800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:104927400-104927800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
30	chr14:104927400-104927800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
31	chr14:104927400-104927800	Flanking Active TSS	Brain Germinal Matrix	brain
32	chr14:104927400-104927800	Bivalent Enhancer	Fetal Intestine Large	intestine
33	chr14:104927400-104927800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
34	chr14:104927400-104927800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr14:104927400-104927800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
36	chr14:104927400-104927800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr14:104927400-104927800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
38	chr14:104927400-104928000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr14:104927400-104928000	Active TSS	Brain Anterior Caudate	brain
40	chr14:104927400-104928000	Bivalent Enhancer	Lung	lung
41	chr14:104927400-104928200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:104927400-104928200	Active TSS	Right Atrium	heart
43	chr14:104927400-104928400	Active TSS	H9 Cell Line	embryonic stem cell
44	chr14:104927400-104928400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:104927400-104928400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:104927400-104928600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
47	chr14:104927400-104928600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr14:104927400-104928600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
49	chr14:104927400-104928800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr14:104927400-104928800	Bivalent/Poised TSS	Brain Angular Gyrus	brain

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