Variant report

Variant	rs73352882
Chromosome Location	chr10:89569699-89569700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89564584..89567110-chr10:89568918..89570948,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11202572	0.83[AFR][1000 genomes]
rs11202573	1.00[AFR][1000 genomes]
rs12240369	0.83[AFR][1000 genomes]
rs12241293	0.83[AFR][1000 genomes]
rs12252040	0.83[AFR][1000 genomes]
rs12262711	0.83[AFR][1000 genomes]
rs12267114	0.83[AFR][1000 genomes]
rs7078640	1.00[AFR][1000 genomes]
rs73352868	0.83[AFR][1000 genomes]
rs73352874	0.83[AFR][1000 genomes]
rs73352876	0.83[AFR][1000 genomes]
rs73352886	0.83[AFR][1000 genomes]
rs73352889	1.00[AFR][1000 genomes]
rs7902457	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
4	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
7	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
11	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
12	chr10:89542000-89571200	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:89543000-89571400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:89543200-89572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
16	chr10:89548200-89574800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:89549400-89575400	Weak transcription	Brain Angular Gyrus	brain
18	chr10:89550000-89572200	Weak transcription	HUVEC	blood vessel
19	chr10:89552800-89571400	Weak transcription	NHEK	skin
20	chr10:89553000-89570000	Weak transcription	HMEC	breast
21	chr10:89553200-89569800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:89554400-89570800	Weak transcription	Esophagus	oesophagus
23	chr10:89554400-89577200	Weak transcription	Pancreas	Pancrea
24	chr10:89556200-89573800	Strong transcription	HSMM	muscle
25	chr10:89557000-89575000	Weak transcription	Adipose Nuclei	Adipose
26	chr10:89557000-89575800	Weak transcription	NH-A	brain
27	chr10:89558000-89573400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:89558800-89570400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:89560600-89575000	Weak transcription	Small Intestine	intestine
30	chr10:89560800-89575600	Weak transcription	Fetal Brain Male	brain
31	chr10:89561600-89571400	Weak transcription	Osteobl	bone
32	chr10:89561600-89576600	Weak transcription	Fetal Kidney	kidney
33	chr10:89561800-89570600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:89561800-89576200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:89562200-89574600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:89562200-89574800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr10:89562400-89571200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:89562400-89571200	Weak transcription	Liver	Liver
39	chr10:89562400-89575000	Weak transcription	Psoas Muscle	Psoas
40	chr10:89562400-89577400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:89562600-89575600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr10:89563000-89573000	Strong transcription	Fetal Thymus	thymus
43	chr10:89563000-89576600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:89563200-89570400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:89563600-89570800	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:89563600-89574200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:89563600-89574400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:89563600-89575400	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:89563800-89571400	Weak transcription	HepG2	liver
50	chr10:89563800-89571600	Weak transcription	Fetal Muscle Leg	muscle

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