Variant report

Variant	rs73352876
Chromosome Location	chr10:89563291-89563292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11202542	0.91[AFR][1000 genomes]
rs11202572	1.00[AFR][1000 genomes]
rs11202573	0.83[AFR][1000 genomes]
rs12240369	1.00[AFR][1000 genomes]
rs12241293	1.00[AFR][1000 genomes]
rs12241491	0.85[AFR][1000 genomes]
rs12256039	0.91[AFR][1000 genomes]
rs12261187	0.91[AFR][1000 genomes]
rs12261572	0.91[AFR][1000 genomes]
rs12267114	1.00[AFR][1000 genomes]
rs7078640	0.83[AFR][1000 genomes]
rs73352850	0.91[AFR][1000 genomes]
rs73352853	0.91[AFR][1000 genomes]
rs73352868	1.00[AFR][1000 genomes]
rs73352874	1.00[AFR][1000 genomes]
rs73352882	0.83[AFR][1000 genomes]
rs73352883	0.85[AFR][1000 genomes]
rs73352886	1.00[AFR][1000 genomes]
rs73352889	0.83[AFR][1000 genomes]
rs7897414	0.91[AFR][1000 genomes]
rs7902457	1.00[AFR][1000 genomes]
rs7921963	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
4	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
7	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
10	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
11	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
12	chr10:89542000-89571200	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:89543000-89571400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:89543200-89572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
16	chr10:89547000-89563800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:89548200-89574800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:89549400-89575400	Weak transcription	Brain Angular Gyrus	brain
19	chr10:89550000-89572200	Weak transcription	HUVEC	blood vessel
20	chr10:89552600-89566200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr10:89552800-89571400	Weak transcription	NHEK	skin
22	chr10:89553000-89570000	Weak transcription	HMEC	breast
23	chr10:89553200-89565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:89553200-89569800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:89554400-89570800	Weak transcription	Esophagus	oesophagus
26	chr10:89554400-89577200	Weak transcription	Pancreas	Pancrea
27	chr10:89555400-89564600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:89556200-89573800	Strong transcription	HSMM	muscle
29	chr10:89556400-89565800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:89556600-89569200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:89557000-89575000	Weak transcription	Adipose Nuclei	Adipose
32	chr10:89557000-89575800	Weak transcription	NH-A	brain
33	chr10:89557400-89563400	Weak transcription	Brain Germinal Matrix	brain
34	chr10:89557600-89567000	Weak transcription	Placenta	Placenta
35	chr10:89557800-89567200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:89558000-89569200	Weak transcription	Fetal Stomach	stomach
37	chr10:89558000-89573400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:89558200-89564600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:89558200-89565200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:89558800-89564200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr10:89558800-89565200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
42	chr10:89558800-89570400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:89559000-89563600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:89559000-89563800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
45	chr10:89559000-89564000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
46	chr10:89559000-89565800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr10:89559200-89565200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr10:89559200-89565400	ZNF genes & repeats	Dnd41	blood
49	chr10:89559200-89569400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:89559800-89563400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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