Variant report

Variant	rs73352850
Chromosome Location	chr10:89519876-89519877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89517545..89520078-chr10:89524489..89526607,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11202542	1.00[AFR][1000 genomes]
rs11202572	0.91[AFR][1000 genomes]
rs12240369	0.91[AFR][1000 genomes]
rs12241293	0.91[AFR][1000 genomes]
rs12256039	1.00[AFR][1000 genomes]
rs12261187	1.00[AFR][1000 genomes]
rs12261572	1.00[AFR][1000 genomes]
rs12267114	0.91[AFR][1000 genomes]
rs73352840	0.82[AFR][1000 genomes]
rs73352853	1.00[AFR][1000 genomes]
rs73352868	0.91[AFR][1000 genomes]
rs73352874	0.91[AFR][1000 genomes]
rs73352876	0.91[AFR][1000 genomes]
rs73352886	0.91[AFR][1000 genomes]
rs7897414	1.00[AFR][1000 genomes]
rs7902457	0.91[AFR][1000 genomes]
rs7921963	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:89473000-89577200	Weak transcription	Gastric	stomach
3	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
4	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
5	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
9	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
11	chr10:89495400-89525600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
13	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
14	chr10:89503200-89521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:89503400-89523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:89503400-89528400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:89504200-89551800	Weak transcription	Psoas Muscle	Psoas
18	chr10:89505000-89520000	Weak transcription	Fetal Stomach	stomach
19	chr10:89506800-89520000	Weak transcription	Fetal Intestine Small	intestine
20	chr10:89507000-89525600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:89507000-89557600	Weak transcription	Lung	lung
22	chr10:89509000-89527000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:89510200-89553800	Weak transcription	Esophagus	oesophagus
24	chr10:89510400-89525800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr10:89510800-89523000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
27	chr10:89511200-89521400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:89511200-89526800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:89511400-89521200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:89511600-89525600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:89512000-89520200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:89512000-89520400	Strong transcription	Dnd41	blood
33	chr10:89512000-89522200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:89512400-89521400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:89512400-89521800	Weak transcription	NHLF	lung
36	chr10:89512600-89520200	Weak transcription	Thymus	Thymus
37	chr10:89512600-89525600	Weak transcription	Fetal Brain Female	brain
38	chr10:89512800-89560400	Weak transcription	Fetal Brain Male	brain
39	chr10:89513000-89520200	Strong transcription	GM12878-XiMat	blood
40	chr10:89513000-89521400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:89513200-89520200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:89513200-89520600	Strong transcription	HSMM	muscle
43	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr10:89513600-89520400	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:89513800-89521200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:89514000-89520600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:89514000-89521400	Strong transcription	Primary T cells from cord blood	blood
48	chr10:89514400-89520000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:89514600-89524800	Weak transcription	Fetal Lung	lung
50	chr10:89514600-89525600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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