Variant report

Variant	rs12261187
Chromosome Location	chr10:89509402-89509403
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89505994..89507604-chr10:89507686..89509977,2	K562	blood:

rs_ID	r²[population]
rs11202542	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11202572	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11202573	1.00[YRI][hapmap]
rs12240369	0.91[AFR][1000 genomes]
rs12241293	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12241491	1.00[YRI][hapmap]
rs12252040	1.00[YRI][hapmap]
rs12256039	1.00[AFR][1000 genomes]
rs12258586	1.00[YRI][hapmap]
rs12261572	1.00[AFR][1000 genomes]
rs12262711	1.00[YRI][hapmap]
rs12267114	0.91[AFR][1000 genomes]
rs73352840	0.82[AFR][1000 genomes]
rs73352850	1.00[AFR][1000 genomes]
rs73352853	1.00[AFR][1000 genomes]
rs73352868	0.91[AFR][1000 genomes]
rs73352874	0.91[AFR][1000 genomes]
rs73352876	0.91[AFR][1000 genomes]
rs73352886	0.91[AFR][1000 genomes]
rs7897414	1.00[AFR][1000 genomes]
rs7902457	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7921963	0.91[AFR][1000 genomes]

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89460400-89512000	Weak transcription	HSMM	muscle
2	chr10:89463000-89541400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89473000-89577200	Weak transcription	Gastric	stomach
4	chr10:89476200-89542400	Weak transcription	Pancreas	Pancrea
5	chr10:89490800-89511400	Weak transcription	Primary B cells from cord blood	blood
6	chr10:89495000-89512200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:89495000-89514000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:89495000-89541400	Weak transcription	Right Ventricle	heart
9	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:89495200-89509600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:89495200-89511800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:89495200-89514000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:89495200-89515600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:89495200-89530600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:89495200-89542600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:89495200-89544600	Weak transcription	Brain Substantia Nigra	brain
17	chr10:89495200-89559200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
19	chr10:89495400-89525600	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:89495600-89513000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:89498200-89519400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:89498200-89541400	Weak transcription	Aorta	Aorta
23	chr10:89498800-89536200	Weak transcription	Small Intestine	intestine
24	chr10:89499800-89511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:89500600-89511800	Weak transcription	HMEC	breast
26	chr10:89500600-89513000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:89501000-89509600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:89501000-89511600	Weak transcription	Hela-S3	cervix
29	chr10:89502800-89511000	Strong transcription	Liver	Liver
30	chr10:89503200-89521200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:89503400-89523200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:89503400-89528400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:89503600-89509600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:89503600-89512000	Weak transcription	Placenta	Placenta
35	chr10:89503600-89513600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr10:89503600-89515600	Weak transcription	HepG2	liver
37	chr10:89504200-89509800	Weak transcription	Brain Germinal Matrix	brain
38	chr10:89504200-89551800	Weak transcription	Psoas Muscle	Psoas
39	chr10:89504400-89512000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:89504600-89509800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:89505000-89520000	Weak transcription	Fetal Stomach	stomach
42	chr10:89505200-89510000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:89505400-89509600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:89505600-89509600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:89505600-89512200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr10:89505600-89514000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr10:89505800-89510200	Weak transcription	Colonic Mucosa	Colon
48	chr10:89506400-89511800	Weak transcription	A549	lung
49	chr10:89506800-89513600	Weak transcription	Adipose Nuclei	Adipose
50	chr10:89506800-89513800	Weak transcription	Ovary	ovary

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