Variant report

Variant	rs73353705
Chromosome Location	chr10:116239096-116239097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116237939..116240221-chr10:116245717..116247782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11815255	1.00[EUR][1000 genomes]
rs12098752	1.00[EUR][1000 genomes]
rs2025105	1.00[EUR][1000 genomes]
rs2145897	1.00[EUR][1000 genomes]
rs4519007	1.00[EUR][1000 genomes]
rs57123094	1.00[EUR][1000 genomes]
rs59912836	1.00[EUR][1000 genomes]
rs7086026	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
2	chr10:116199200-116243400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:116199600-116244600	Weak transcription	A549	lung
4	chr10:116199800-116249200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:116201000-116242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:116218400-116249200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
10	chr10:116225600-116242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:116225600-116246800	Weak transcription	NHEK	skin
12	chr10:116225600-116278800	Weak transcription	HSMM	muscle
13	chr10:116227200-116247400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:116229400-116240800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:116229400-116244800	Weak transcription	Thymus	Thymus
16	chr10:116229800-116239200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:116230000-116240800	Weak transcription	Esophagus	oesophagus
18	chr10:116230000-116243600	Weak transcription	Lung	lung
19	chr10:116230600-116241800	Weak transcription	HSMMtube	muscle
20	chr10:116231000-116239800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:116231000-116241000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:116231000-116244400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:116231200-116239200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:116231200-116243600	Weak transcription	Fetal Thymus	thymus
25	chr10:116231200-116251600	Weak transcription	GM12878-XiMat	blood
26	chr10:116231400-116244400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:116231800-116240600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:116231800-116244800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:116231800-116249200	Weak transcription	Pancreas	Pancrea
30	chr10:116232400-116246800	Weak transcription	HMEC	breast
31	chr10:116232600-116244600	Weak transcription	Colonic Mucosa	Colon
32	chr10:116232800-116239800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:116232800-116244600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:116232800-116244800	Weak transcription	Hela-S3	cervix
35	chr10:116232800-116245600	Weak transcription	Brain Anterior Caudate	brain
36	chr10:116233000-116243800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:116233000-116244600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr10:116233000-116247600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:116233000-116248800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:116233200-116243400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:116233200-116245600	Weak transcription	HUVEC	blood vessel
42	chr10:116233400-116243000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:116233800-116244400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:116234000-116243200	Weak transcription	Fetal Intestine Small	intestine
45	chr10:116234000-116247800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:116234200-116240400	Weak transcription	Liver	Liver
47	chr10:116236200-116242800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:116236600-116239400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:116236600-116239800	Enhancers	Ovary	ovary
50	chr10:116236600-116242800	Genic enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links