Variant report

Variant	rs7894553
Chromosome Location	chr10:116248532-116248533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11815255	1.00[EUR][1000 genomes]
rs12098752	1.00[EUR][1000 genomes]
rs2025105	1.00[EUR][1000 genomes]
rs2145897	1.00[EUR][1000 genomes]
rs4519007	1.00[EUR][1000 genomes]
rs57123094	1.00[EUR][1000 genomes]
rs59912836	1.00[EUR][1000 genomes]
rs7086026	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73353705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
2	chr10:116199800-116249200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:116218400-116249200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:116222200-116264400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:116225000-116267200	Weak transcription	Aorta	Aorta
7	chr10:116225600-116278800	Weak transcription	HSMM	muscle
8	chr10:116231200-116251600	Weak transcription	GM12878-XiMat	blood
9	chr10:116231800-116249200	Weak transcription	Pancreas	Pancrea
10	chr10:116233000-116248800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:116237400-116248800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:116237800-116249000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr10:116238200-116251400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:116238400-116251600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:116238600-116249200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:116239000-116248800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:116239400-116249200	Weak transcription	Stomach Mucosa	stomach
18	chr10:116239400-116249400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:116240600-116250400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:116241800-116251600	Strong transcription	HSMMtube	muscle
21	chr10:116242400-116250000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr10:116242800-116249000	Strong transcription	Primary T cells from cord blood	blood
23	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
24	chr10:116243200-116249200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:116243400-116251200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:116243400-116251600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr10:116243600-116249000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:116243800-116249200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:116243800-116252000	Weak transcription	Colon Smooth Muscle	Colon
30	chr10:116244000-116249400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:116244000-116249600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:116245000-116249400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:116245000-116249400	Weak transcription	Gastric	stomach
34	chr10:116245000-116258800	Weak transcription	Colonic Mucosa	Colon
35	chr10:116245200-116249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:116245200-116249200	Weak transcription	Fetal Stomach	stomach
37	chr10:116245200-116249400	Weak transcription	Psoas Muscle	Psoas
38	chr10:116245400-116251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:116245600-116249000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:116245600-116249000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:116245800-116248800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:116245800-116249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:116245800-116249400	Weak transcription	Fetal Lung	lung
44	chr10:116245800-116249400	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr10:116246000-116249000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr10:116246000-116249200	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:116246000-116249400	Weak transcription	Fetal Brain Male	brain
48	chr10:116246000-116250400	Strong transcription	Primary B cells from cord blood	blood
49	chr10:116246200-116249400	Weak transcription	Brain Anterior Caudate	brain
50	chr10:116246400-116249200	Weak transcription	Ovary	ovary

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