Variant report

Variant	rs73354481
Chromosome Location	chr12:83068821-83068822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:82752233..82753944-chr12:83068187..83071697,3	MCF-7	breast:
2	chr12:83068566..83070465-chr12:83075258..83077801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127720	Chromatin interaction
ENSG00000133773	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11115339	0.83[EUR][1000 genomes]
rs11115342	0.84[EUR][1000 genomes]
rs11115348	0.84[EUR][1000 genomes]
rs11115353	0.87[EUR][1000 genomes]
rs11609532	0.92[EUR][1000 genomes]
rs11614435	0.87[EUR][1000 genomes]
rs12305736	0.84[EUR][1000 genomes]
rs12307168	0.84[EUR][1000 genomes]
rs12422405	0.83[EUR][1000 genomes]
rs12423043	0.84[EUR][1000 genomes]
rs17009812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009851	0.84[EUR][1000 genomes]
rs17009854	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17009856	0.84[EUR][1000 genomes]
rs17009882	0.81[EUR][1000 genomes]
rs17009885	0.81[EUR][1000 genomes]
rs1922576	0.84[EUR][1000 genomes]
rs1922579	0.91[EUR][1000 genomes]
rs4882428	0.84[EUR][1000 genomes]
rs55657485	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56298822	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56396658	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61485473	0.84[EUR][1000 genomes]
rs74106267	0.84[EUR][1000 genomes]
rs7954021	0.83[EUR][1000 genomes]
rs7961953	0.85[EUR][1000 genomes]
rs7975647	0.84[EUR][1000 genomes]
rs9805078	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053093	chr12:82645292-83287809	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv541551	chr12:82645292-83287809	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv559541	chr12:82715210-83108395	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv899348	chr12:82744187-83169297	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv427917	chr12:82917031-83279712	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv899349	chr12:82931646-83114286	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv521849	chr12:83013783-83991479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:83067200-83069200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:83067200-83076000	Weak transcription	Brain Substantia Nigra	brain

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