Variant report

Variant	rs73354933
Chromosome Location	chr12:59344814-59344815
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11172836	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609012	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11833697	0.86[EUR][1000 genomes]
rs11833888	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121834	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121856	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121860	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121863	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121866	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121868	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121873	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823337	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59340973	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354920	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354921	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354927	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354934	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354937	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73354942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043385	chr12:59149582-59758952	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1067596	chr12:59167152-59764208	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv492251	chr12:59167152-59764208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv559048	chr12:59336737-59440659	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:59341200-59345800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:59343400-59345000	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr12:59343400-59345400	Enhancers	Fetal Intestine Large	intestine
4	chr12:59343600-59345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:59343800-59345000	Active TSS	Duodenum Mucosa	Duodenum
6	chr12:59344000-59345000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:59344200-59345000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:59344400-59347200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:59344600-59345000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr12:59344600-59355000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:59344800-59345000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:59344800-59345000	Enhancers	Fetal Intestine Small	intestine
13	chr12:59344800-59345000	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr12:59344800-59349800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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