Variant report
| Variant | rs73355870 |
|---|---|
| Chromosome Location | chr21:40535035-40535036 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235701 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs56666138 | 1.00[AMR][1000 genomes] |
| rs59618845 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60835204 | 1.00[AMR][1000 genomes] |
| rs61056640 | 1.00[AMR][1000 genomes] |
| rs73355850 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73355858 | 1.00[AMR][1000 genomes] |
| rs73355859 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73355861 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73355877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73355886 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73355898 | 1.00[AMR][1000 genomes] |
| rs73357810 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73357816 | 1.00[AMR][1000 genomes] |
| rs73357862 | 1.00[AMR][1000 genomes] |
| rs73357865 | 1.00[AMR][1000 genomes] |
| rs73357877 | 1.00[AMR][1000 genomes] |
| rs73357888 | 1.00[AMR][1000 genomes] |
| rs73357891 | 1.00[AMR][1000 genomes] |
| rs73357900 | 1.00[AMR][1000 genomes] |
| rs73359508 | 1.00[AMR][1000 genomes] |
| rs73359510 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1061831 | chr21:40376316-40583555 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv544443 | chr21:40376316-40583555 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:40533600-40545400 | Weak transcription | HUVEC | blood vessel |
