Variant report

Variant	rs73355877
Chromosome Location	chr21:40537303-40537304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56666138	1.00[AMR][1000 genomes]
rs59618845	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60835204	1.00[AMR][1000 genomes]
rs61056640	1.00[AMR][1000 genomes]
rs73355850	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73355858	1.00[AMR][1000 genomes]
rs73355859	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73355861	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73355870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73355886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73355898	1.00[AMR][1000 genomes]
rs73357810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357816	1.00[AMR][1000 genomes]
rs73357862	1.00[AMR][1000 genomes]
rs73357865	1.00[AMR][1000 genomes]
rs73357877	1.00[AMR][1000 genomes]
rs73357888	1.00[AMR][1000 genomes]
rs73357891	1.00[AMR][1000 genomes]
rs73357900	1.00[AMR][1000 genomes]
rs73359508	1.00[AMR][1000 genomes]
rs73359510	1.00[AMR][1000 genomes]
rs73361751	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061831	chr21:40376316-40583555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv544443	chr21:40376316-40583555	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40533600-40545400	Weak transcription	HUVEC	blood vessel
2	chr21:40536200-40537400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr21:40536400-40541200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr21:40536800-40541200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr21:40537000-40537400	ZNF genes & repeats	Aorta	Aorta
6	chr21:40537200-40541200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr21:40537200-40541200	Weak transcription	Adipose Nuclei	Adipose
8	chr21:40537200-40541200	Weak transcription	HSMMtube	muscle
9	chr21:40537200-40542800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr21:40537200-40543000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr21:40537200-40543000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr21:40537200-40543000	Weak transcription	Lung	lung
13	chr21:40537200-40543000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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