Variant report

Variant	rs73356232
Chromosome Location	chr7:7839321-7839322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7837845..7840802-chr7:7861071..7863334,2	MCF-7	breast:
2	chr7:7838008..7840539-chr7:8008376..8010243,2	MCF-7	breast:
3	chr7:7678792..7681115-chr7:7838459..7841411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106415	Chromatin interaction
ENSG00000106399	Chromatin interaction
ENSG00000219545	Chromatin interaction
ENSG00000233108	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10281466	1.00[EUR][1000 genomes]
rs11980153	1.00[EUR][1000 genomes]
rs28510532	1.00[EUR][1000 genomes]
rs73356247	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73356274	1.00[EUR][1000 genomes]
rs73356282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7802400-7841400	Weak transcription	Ovary	ovary
2	chr7:7805400-7854400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr7:7812400-7854600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr7:7820000-7854600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:7822800-7856000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:7823200-7855200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:7823400-7848000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:7823600-7843000	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:7823800-7842800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:7825400-7845200	Weak transcription	Thymus	Thymus
11	chr7:7825400-7854400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:7825400-7855400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:7825600-7864400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:7830800-7844800	Weak transcription	Right Ventricle	heart
15	chr7:7831000-7856200	Weak transcription	Lung	lung
16	chr7:7832000-7840800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:7832000-7845400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:7832000-7869200	Weak transcription	HSMMtube	muscle
19	chr7:7832400-7869400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr7:7832600-7839600	Enhancers	Hela-S3	cervix
21	chr7:7832600-7845000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:7832600-7856400	Weak transcription	Fetal Muscle Leg	muscle
23	chr7:7832800-7842800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:7833200-7854400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:7833400-7854800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:7834000-7852800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:7834200-7847600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:7834400-7856200	Weak transcription	Adipose Nuclei	Adipose
29	chr7:7835200-7840400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr7:7835200-7845000	Weak transcription	Liver	Liver
31	chr7:7835600-7843000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr7:7835600-7843000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:7835800-7840400	Weak transcription	Stomach Mucosa	stomach
34	chr7:7835800-7843000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:7835800-7855200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:7836000-7869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:7836400-7847600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr7:7836600-7854400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:7836800-7845200	Weak transcription	Fetal Thymus	thymus
40	chr7:7837000-7843000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:7837000-7843200	Weak transcription	Primary T cells from cord blood	blood
42	chr7:7837000-7854400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:7837000-7854400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:7837200-7844400	Weak transcription	Primary B cells from cord blood	blood
45	chr7:7837200-7854600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr7:7837200-7855400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr7:7837200-7876400	Weak transcription	Aorta	Aorta
48	chr7:7837200-7883400	Weak transcription	Left Ventricle	heart
49	chr7:7837400-7839800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:7838000-7839400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links