Variant report

Variant	rs73356274
Chromosome Location	chr7:7847538-7847539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7846215..7848798-chr7:8008335..8010985,2	MCF-7	breast:
2	chr7:7844473..7848021-chr7:8007185..8010732,4	MCF-7	breast:
3	chr7:7845769..7848135-chr7:7850846..7853126,2	MCF-7	breast:
4	chr7:7843600..7848661-chr7:7848887..7852030,4	K562	blood:

Variant related genes	Relation type
ENSG00000106415	Chromatin interaction
ENSG00000233108	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10228711	1.00[AMR][1000 genomes]
rs10281466	1.00[EUR][1000 genomes]
rs11980153	1.00[EUR][1000 genomes]
rs28510532	1.00[EUR][1000 genomes]
rs57666355	1.00[AMR][1000 genomes]
rs57731145	1.00[AMR][1000 genomes]
rs59270439	1.00[AMR][1000 genomes]
rs73231791	1.00[AMR][1000 genomes]
rs73237565	1.00[AMR][1000 genomes]
rs73237581	1.00[AMR][1000 genomes]
rs73237584	1.00[AMR][1000 genomes]
rs73347360	1.00[AMR][1000 genomes]
rs73356232	1.00[EUR][1000 genomes]
rs73356247	1.00[EUR][1000 genomes]
rs73356282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7805400-7854400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr7:7812400-7854600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:7820000-7854600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:7822800-7856000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:7823200-7855200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:7823400-7848000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:7825400-7854400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:7825400-7855400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:7825600-7864400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:7831000-7856200	Weak transcription	Lung	lung
11	chr7:7832000-7869200	Weak transcription	HSMMtube	muscle
12	chr7:7832400-7869400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:7832600-7856400	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:7833200-7854400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:7833400-7854800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:7834000-7852800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:7834200-7847600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:7834400-7856200	Weak transcription	Adipose Nuclei	Adipose
19	chr7:7835800-7855200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:7836000-7869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:7836400-7847600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:7836600-7854400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:7837000-7854400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:7837000-7854400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:7837200-7854600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr7:7837200-7855400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr7:7837200-7876400	Weak transcription	Aorta	Aorta
28	chr7:7837200-7883400	Weak transcription	Left Ventricle	heart
29	chr7:7838400-7855200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:7838600-7851200	Weak transcription	Pancreas	Pancrea
31	chr7:7843400-7860600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:7843800-7847600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:7843800-7847800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:7843800-7854400	Weak transcription	Primary T cells from cord blood	blood
35	chr7:7845400-7850600	Weak transcription	Liver	Liver
36	chr7:7845400-7854400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr7:7846000-7854400	Weak transcription	Fetal Thymus	thymus
38	chr7:7846200-7854400	Weak transcription	Thymus	Thymus
39	chr7:7846800-7854400	Weak transcription	Primary B cells from cord blood	blood
40	chr7:7846800-7856800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:7847200-7847600	Enhancers	A549	lung
42	chr7:7847200-7848800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links