Variant report

Variant	rs73357129
Chromosome Location	chr7:38750609-38750610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12701661	0.83[AFR][1000 genomes]
rs13224619	0.83[AFR][1000 genomes]
rs13224857	0.83[AFR][1000 genomes]
rs13229445	0.83[AFR][1000 genomes]
rs13235997	0.83[AFR][1000 genomes]
rs34997080	0.80[AFR][1000 genomes]
rs35816439	0.83[AFR][1000 genomes]
rs57070127	1.00[AMR][1000 genomes]
rs57865190	0.92[AFR][1000 genomes]
rs58910087	1.00[AMR][1000 genomes]
rs60922992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61050247	1.00[AMR][1000 genomes]
rs61155937	0.92[AFR][1000 genomes]
rs73357142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368282	1.00[AMR][1000 genomes]
rs73369001	0.87[AFR][1000 genomes]
rs73370706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73370712	0.90[AFR][1000 genomes]
rs73370716	0.92[AFR][1000 genomes]
rs73370730	0.83[AFR][1000 genomes]
rs73370736	0.92[AFR][1000 genomes]
rs73370740	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38748800-38756200	Weak transcription	Fetal Brain Female	brain
2	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
3	chr7:38750600-38751000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:38750600-38751000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:38750600-38751400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:38750600-38751400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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