Variant report

Variant	rs73369001
Chromosome Location	chr7:38758287-38758288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12701661	0.89[AFR][1000 genomes]
rs13224619	0.89[AFR][1000 genomes]
rs13224857	0.89[AFR][1000 genomes]
rs13229445	0.89[AFR][1000 genomes]
rs13235997	0.89[AFR][1000 genomes]
rs34997080	0.86[AFR][1000 genomes]
rs35816439	0.89[AFR][1000 genomes]
rs57865190	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60922992	0.87[AFR][1000 genomes]
rs61155937	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73357129	0.87[AFR][1000 genomes]
rs73357142	0.87[AFR][1000 genomes]
rs73370706	0.87[AFR][1000 genomes]
rs73370712	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73370716	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73370730	0.89[AFR][1000 genomes]
rs73370736	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73370740	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887965	chr7:38706384-38793243	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38749000-38803600	Weak transcription	Fetal Brain Male	brain
2	chr7:38754200-38760600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:38754600-38759800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38754600-38760800	Weak transcription	GM12878-XiMat	blood
5	chr7:38755000-38791200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:38755600-38760800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:38755800-38771600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:38756200-38763800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:38756400-38760600	Weak transcription	Primary T cells from cord blood	blood
10	chr7:38756400-38764600	Weak transcription	Fetal Brain Female	brain
11	chr7:38756800-38764800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:38757000-38784200	Weak transcription	HMEC	breast
13	chr7:38757200-38764400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:38757200-38764600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:38757200-38764600	Weak transcription	Ovary	ovary
16	chr7:38757200-38835400	Weak transcription	Psoas Muscle	Psoas
17	chr7:38757400-38760600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:38757400-38760600	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:38757400-38764600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:38757600-38760200	Weak transcription	Fetal Stomach	stomach
21	chr7:38757600-38760400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:38757600-38760600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:38757600-38760600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:38757600-38760600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:38757600-38760600	Weak transcription	Adipose Nuclei	Adipose
26	chr7:38757600-38760800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr7:38757600-38761000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:38757800-38760200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:38757800-38760600	Weak transcription	Brain Anterior Caudate	brain
30	chr7:38757800-38760800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:38758000-38760600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:38758200-38758600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:38758200-38760600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr7:38758200-38760800	Weak transcription	Primary B cells from cord blood	blood

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