Variant report

Variant	rs73357662
Chromosome Location	chr6:14760972-14760973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14758282..14761155-chr6:15248011..15249696,2	MCF-7	breast:
2	chr6:14751271..14756059-chr6:14756361..14761159,4	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000235488	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12332807	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931812	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357637	0.92[AFR][1000 genomes]
rs7763310	0.92[AFR][1000 genomes]
rs7763462	0.92[AFR][1000 genomes]
rs7768746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9296951	0.97[AFR][1000 genomes]
rs9464715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9476644	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9476645	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9476647	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9476649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462641	chr6:14203872-14764983	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv600997	chr6:14203872-14764983	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14743600-14767400	Weak transcription	Right Atrium	heart
2	chr6:14745000-14762800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:14756000-14761000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:14758200-14764200	Enhancers	Liver	Liver
5	chr6:14758400-14764600	Enhancers	Fetal Intestine Large	intestine
6	chr6:14758600-14762000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:14758800-14766800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:14759000-14763400	Weak transcription	Stomach Mucosa	stomach
9	chr6:14759200-14761000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:14759200-14762800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:14759200-14762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:14759200-14763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:14759200-14763200	Weak transcription	Hela-S3	cervix
14	chr6:14759200-14764400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:14759200-14767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:14759600-14762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:14759600-14762800	Weak transcription	HMEC	breast
18	chr6:14759600-14762800	Weak transcription	NHEK	skin
19	chr6:14759600-14764400	Enhancers	Fetal Intestine Small	intestine
20	chr6:14759800-14762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:14759800-14762800	Weak transcription	A549	lung
22	chr6:14760400-14761400	Weak transcription	Placenta	Placenta
23	chr6:14760400-14772400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:14760800-14761400	Enhancers	Small Intestine	intestine
25	chr6:14760800-14761600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:14760800-14762800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:14760800-14765400	Weak transcription	Monocytes-CD14+_RO01746	blood

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