Variant report

Variant	rs9296951
Chromosome Location	chr6:14755687-14755688
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12332807	0.95[AFR][1000 genomes]
rs12333093	0.98[AFR][1000 genomes]
rs6931812	0.91[AFR][1000 genomes]
rs73357637	0.89[AFR][1000 genomes]
rs73357662	0.97[AFR][1000 genomes]
rs7763310	0.89[AFR][1000 genomes]
rs7763462	0.89[AFR][1000 genomes]
rs7768746	0.97[AFR][1000 genomes]
rs9464715	0.97[AFR][1000 genomes]
rs9476644	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs9476645	0.89[AFR][1000 genomes]
rs9476647	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs9476649	1.00[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462641	chr6:14203872-14764983	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv600997	chr6:14203872-14764983	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14730200-14758600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14737400-14758600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:14743600-14767400	Weak transcription	Right Atrium	heart
4	chr6:14745000-14762800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:14755000-14756200	Enhancers	Fetal Thymus	thymus
6	chr6:14755200-14755800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr6:14755600-14755800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:14755600-14756400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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