Variant report

Variant	rs73359062
Chromosome Location	chr10:116310307-116310308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:116310216..116311064-chr10:116454596..116455099,2	MCF-7	breast:
2	chr10:116308927..116312101-chr10:116579635..116582119,3	MCF-7	breast:
3	chr10:116310252..116311787-chr10:116463124..116463956,6	MCF-7	breast:
4	chr10:116310139..116311162-chr10:116454196..116455210,3	K562	blood:
5	chr10:116310194..116311025-chr10:116463074..116463657,3	MCF-7	breast:
6	chr10:116309046..116312030-chr10:116580790..116583146,2	MCF-7	breast:
7	chr10:116310031..116311847-chr10:116382346..116385171,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3808949	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3808951	0.81[ASN][1000 genomes]
rs56931034	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068967	0.81[ASN][1000 genomes]
rs7076323	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7089641	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7091712	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894443	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920653	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116287400-116310600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:116287400-116310600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:116298600-116311600	Weak transcription	Gastric	stomach
4	chr10:116298800-116310400	Weak transcription	Small Intestine	intestine
5	chr10:116298800-116310600	Weak transcription	Colonic Mucosa	Colon
6	chr10:116300600-116310600	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:116301800-116310600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:116301800-116310600	Weak transcription	Fetal Lung	lung
9	chr10:116301800-116310800	Weak transcription	HSMM	muscle
10	chr10:116304000-116310600	Weak transcription	Brain Anterior Caudate	brain
11	chr10:116304000-116310600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:116304200-116310800	Weak transcription	Pancreas	Pancrea
13	chr10:116305000-116311000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:116305000-116317600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:116305200-116310600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:116305200-116310600	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:116305200-116310800	Weak transcription	Esophagus	oesophagus
18	chr10:116305200-116310800	Weak transcription	Lung	lung
19	chr10:116305200-116316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:116305200-116318200	Weak transcription	Fetal Intestine Large	intestine
21	chr10:116306400-116310400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:116307200-116310400	Weak transcription	Adipose Nuclei	Adipose
23	chr10:116307400-116310800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:116307600-116310400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:116307600-116310600	Weak transcription	HSMMtube	muscle
26	chr10:116307600-116313400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:116307600-116316000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:116307800-116310600	Weak transcription	Brain Substantia Nigra	brain
29	chr10:116307800-116310600	Weak transcription	HUVEC	blood vessel
30	chr10:116307800-116310800	Weak transcription	Right Ventricle	heart
31	chr10:116307800-116317600	Weak transcription	Fetal Intestine Small	intestine
32	chr10:116308000-116310600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:116308000-116310600	Weak transcription	Right Atrium	heart
34	chr10:116308400-116310400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr10:116308400-116310600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:116308400-116311600	Weak transcription	Thymus	Thymus
37	chr10:116308600-116310600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:116308600-116310600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:116308600-116310800	Weak transcription	Stomach Mucosa	stomach
40	chr10:116308600-116311400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:116308600-116312600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr10:116308600-116313200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:116308600-116315800	Weak transcription	HepG2	liver
44	chr10:116308800-116310400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:116308800-116310400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:116308800-116310400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:116308800-116310600	Weak transcription	Liver	Liver
48	chr10:116308800-116310600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:116308800-116310600	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr10:116308800-116310600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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