Variant report

Variant	rs7336012
Chromosome Location	chr13:39645448-39645449
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6563665	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7330797	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7334757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7987882	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7989526	1.00[AMR][1000 genomes]
rs7990255	1.00[AMR][1000 genomes]
rs7991347	1.00[AMR][1000 genomes]
rs7997010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753553	chr13:39526600-39649000	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39613200-39647000	Weak transcription	Left Ventricle	heart
2	chr13:39613200-39647200	Weak transcription	Lung	lung
3	chr13:39613400-39646600	Weak transcription	Aorta	Aorta
4	chr13:39628000-39645800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr13:39628200-39646800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:39635800-39646600	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:39636800-39645600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr13:39637200-39647800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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