Variant report

Variant	rs7989526
Chromosome Location	chr13:39666667-39666668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6563665	1.00[AMR][1000 genomes]
rs7330797	1.00[AMR][1000 genomes]
rs7334757	1.00[AMR][1000 genomes]
rs7336012	1.00[AMR][1000 genomes]
rs7987882	1.00[AMR][1000 genomes]
rs7990255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7991347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7997010	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39664200-39667200	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:39666000-39669000	Enhancers	Brain Hippocampus Middle	brain
3	chr13:39666200-39667600	Enhancers	Brain Substantia Nigra	brain
4	chr13:39666400-39667800	Enhancers	Brain Cingulate Gyrus	brain
5	chr13:39666600-39666800	Flanking Active TSS	Brain Angular Gyrus	brain
6	chr13:39666600-39666800	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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