Variant report

Variant	rs73361549
Chromosome Location	chr6:15297939-15297940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15267883..15270425-chr6:15297715..15299571,2	K562	blood:
2	chr6:15245473..15252079-chr6:15297257..15300680,10	K562	blood:
3	chr6:15246258..15249740-chr6:15297448..15300680,7	K562	blood:

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11968075	1.00[AMR][1000 genomes]
rs16876233	1.00[AMR][1000 genomes]
rs3857641	1.00[AMR][1000 genomes]
rs56156626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58053975	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361576	1.00[AMR][1000 genomes]
rs794777	0.92[AFR][1000 genomes]
rs794778	0.92[AFR][1000 genomes]
rs794779	0.92[AFR][1000 genomes]
rs794783	0.94[AFR][1000 genomes]
rs794785	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv601006	chr6:15275305-15300590	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15281800-15300200	Weak transcription	Fetal Stomach	stomach
2	chr6:15282400-15299400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15285200-15299400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:15285200-15299400	Weak transcription	A549	lung
5	chr6:15285800-15299400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:15285800-15299800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:15286400-15299400	Weak transcription	NHEK	skin
8	chr6:15286400-15299600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:15286800-15299200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:15288800-15299000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:15288800-15299600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:15289000-15299200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:15289600-15299400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:15290200-15298200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:15290200-15298200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:15290200-15299000	Weak transcription	Osteobl	bone
17	chr6:15290200-15300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:15290600-15298000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:15290600-15309400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:15290800-15298400	Weak transcription	HepG2	liver
21	chr6:15290800-15299400	Weak transcription	Hela-S3	cervix
22	chr6:15291800-15299400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:15291800-15299600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:15292000-15298600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:15292000-15299200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:15292000-15299600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:15292000-15299600	Weak transcription	HSMM	muscle
28	chr6:15292000-15303600	Weak transcription	Ovary	ovary
29	chr6:15293000-15301200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:15293000-15302800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:15293400-15298200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:15293600-15302000	Enhancers	Primary B cells from peripheral blood	blood
33	chr6:15294000-15301800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:15294000-15303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:15294200-15298000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:15294200-15299200	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:15294200-15302200	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr6:15294400-15298800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:15294400-15299400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:15294400-15299400	Weak transcription	Stomach Mucosa	stomach
41	chr6:15294400-15299600	Weak transcription	Esophagus	oesophagus
42	chr6:15294400-15299800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:15294400-15299800	Weak transcription	HSMMtube	muscle
44	chr6:15294400-15300200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:15294400-15303600	Weak transcription	Brain Germinal Matrix	brain
46	chr6:15294600-15298600	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:15294800-15298600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:15294800-15299400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:15294800-15299400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:15295000-15298000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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