Variant report

Variant	rs73361569
Chromosome Location	chr6:15320183-15320184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15318521..15320640-chr6:15322332..15324913,2	MCF-7	breast:
2	chr6:15209912..15212798-chr6:15319363..15322301,3	K562	blood:
3	chr6:15307880..15309587-chr6:15317665..15320431,3	K562	blood:
4	chr6:15320114..15322531-chr6:15458945..15460458,2	MCF-7	breast:
5	chr6:15294357..15295870-chr6:15319327..15321466,2	K562	blood:

Variant related genes	Relation type
ENSG00000201519	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11968075	1.00[AMR][1000 genomes]
rs16876233	1.00[AMR][1000 genomes]
rs3857641	1.00[AMR][1000 genomes]
rs56156626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58053975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361549	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361576	1.00[AMR][1000 genomes]
rs794777	0.90[AFR][1000 genomes]
rs794778	0.90[AFR][1000 genomes]
rs794779	0.90[AFR][1000 genomes]
rs794783	0.96[AFR][1000 genomes]
rs794785	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv949448	chr6:15279490-15449441	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1025512	chr6:15291551-15452395	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv538143	chr6:15291551-15452395	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538144	chr6:15310696-15364984	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15309200-15320600	Weak transcription	A549	lung
2	chr6:15311000-15322200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:15311200-15330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:15313200-15320400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:15313200-15322400	Weak transcription	HMEC	breast
6	chr6:15313200-15322800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:15313200-15323400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:15313200-15326600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:15313400-15322600	Weak transcription	Osteobl	bone
10	chr6:15313600-15322800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:15313800-15321000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:15313800-15321000	Weak transcription	NHEK	skin
13	chr6:15313800-15321200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:15313800-15325400	Weak transcription	Liver	Liver
15	chr6:15314000-15322000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:15314000-15322400	Weak transcription	Gastric	stomach
17	chr6:15314000-15323800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:15314200-15324000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:15314200-15326600	Weak transcription	Ovary	ovary
20	chr6:15314400-15322200	Weak transcription	Pancreas	Pancrea
21	chr6:15314400-15327600	Weak transcription	Aorta	Aorta
22	chr6:15314600-15322600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:15315000-15322600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr6:15315400-15323200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:15315600-15320400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:15315600-15321200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:15315600-15321400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:15315600-15323400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr6:15316000-15321200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr6:15316400-15320400	Enhancers	HepG2	liver
31	chr6:15316400-15320600	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:15316600-15322400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr6:15316800-15321400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:15317000-15320600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:15317000-15321200	Flanking Active TSS	GM12878-XiMat	blood
36	chr6:15317200-15321600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:15317200-15323600	Enhancers	Primary hematopoietic stem cells	blood
38	chr6:15317400-15320400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:15317400-15321200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr6:15317400-15323600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:15317800-15320600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:15317800-15322200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:15317800-15322200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:15318000-15321000	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr6:15318000-15323800	Enhancers	K562	blood
46	chr6:15318200-15323600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:15318200-15326600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:15318400-15320200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr6:15318400-15320400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr6:15318400-15322200	Weak transcription	Stomach Mucosa	stomach

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