Variant report

Variant	rs73362531
Chromosome Location	chr6:4794822-4794823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:4780165..4781878-chr6:4793453..4796375,2	MCF-7	breast:
2	chr6:4773227..4775902-chr6:4794032..4796100,3	K562	blood:
3	chr6:4788250..4792483-chr6:4794003..4797255,3	MCF-7	breast:
4	chr6:4789235..4792155-chr6:4793481..4795463,2	MCF-7	breast:
5	chr6:4794303..4796795-chr6:4800543..4803644,3	MCF-7	breast:
6	chr6:4792198..4795209-chr6:4799398..4802329,4	K562	blood:
7	chr6:4776600..4778959-chr6:4792852..4796452,3	K562	blood:
8	chr6:4775173..4778189-chr6:4793208..4796726,4	MCF-7	breast:
9	chr6:4773227..4775902-chr6:4794032..4797060,3	K562	blood:
10	chr6:4794008..4795795-chr6:4859936..4861465,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236336	Chromatin interaction
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1016878	0.83[AMR][1000 genomes]
rs2875970	1.00[AMR][1000 genomes]
rs57332003	1.00[AMR][1000 genomes]
rs58825791	1.00[AMR][1000 genomes]
rs58938392	1.00[AMR][1000 genomes]
rs58992102	1.00[AMR][1000 genomes]
rs59019088	1.00[AMR][1000 genomes]
rs59362617	0.83[AMR][1000 genomes]
rs59469271	0.83[AMR][1000 genomes]
rs59530044	1.00[AMR][1000 genomes]
rs60161880	1.00[AMR][1000 genomes]
rs60469143	1.00[AMR][1000 genomes]
rs60567289	0.83[AMR][1000 genomes]
rs60650385	1.00[AMR][1000 genomes]
rs61323400	1.00[AMR][1000 genomes]
rs61657419	0.83[AMR][1000 genomes]
rs73348304	1.00[AMR][1000 genomes]
rs73348324	1.00[AMR][1000 genomes]
rs73348337	1.00[AMR][1000 genomes]
rs73362537	1.00[AMR][1000 genomes]
rs73362548	1.00[AMR][1000 genomes]
rs73362552	1.00[AMR][1000 genomes]
rs73364539	1.00[AMR][1000 genomes]
rs73364540	1.00[AMR][1000 genomes]
rs73364542	1.00[AMR][1000 genomes]
rs73364544	1.00[AMR][1000 genomes]
rs73364545	1.00[AMR][1000 genomes]
rs73364551	1.00[AMR][1000 genomes]
rs73364553	1.00[AMR][1000 genomes]
rs73364577	1.00[AMR][1000 genomes]
rs73364580	1.00[AMR][1000 genomes]
rs734783	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4781600-4797800	Weak transcription	Hela-S3	cervix
2	chr6:4782000-4797800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:4787400-4808800	Weak transcription	Aorta	Aorta
4	chr6:4790000-4799800	Weak transcription	Ovary	ovary
5	chr6:4790200-4803200	Weak transcription	Pancreas	Pancrea
6	chr6:4790600-4801600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:4790800-4801200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:4790800-4801200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:4791000-4795600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:4791000-4795600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:4791000-4797200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:4791200-4795800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:4791800-4797800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:4792200-4797600	Weak transcription	NH-A	brain
15	chr6:4792800-4795000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:4792800-4795000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:4793000-4795000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:4793200-4795200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:4793400-4795000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr6:4793400-4795000	Enhancers	Left Ventricle	heart
21	chr6:4793400-4795000	Enhancers	Lung	lung
22	chr6:4793400-4795000	Enhancers	Right Atrium	heart
23	chr6:4793400-4795000	Enhancers	Right Ventricle	heart
24	chr6:4793400-4795200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr6:4793600-4799600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:4793800-4795000	Enhancers	Fetal Heart	heart
27	chr6:4793800-4798600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:4793800-4799600	Weak transcription	Fetal Intestine Small	intestine
29	chr6:4793800-4799800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:4794000-4795000	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:4794000-4795000	Enhancers	Small Intestine	intestine
32	chr6:4794000-4795000	Enhancers	Spleen	Spleen
33	chr6:4794000-4795200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:4794000-4795200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:4794000-4795200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:4794200-4795000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:4794200-4795000	Enhancers	Brain Cingulate Gyrus	brain
38	chr6:4794200-4795000	Enhancers	Stomach Mucosa	stomach
39	chr6:4794200-4798200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:4794400-4795000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:4794400-4795000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:4794400-4795000	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr6:4794400-4795000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:4794400-4795000	Enhancers	Brain Substantia Nigra	brain
45	chr6:4794400-4795000	Flanking Active TSS	Fetal Lung	lung
46	chr6:4794400-4795000	Enhancers	Gastric	stomach
47	chr6:4794400-4795000	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr6:4794400-4795000	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr6:4794400-4795000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:4794400-4795000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links