Variant report

Variant	rs73362537
Chromosome Location	chr6:4798218-4798219
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4779066..4782355-chr6:4795807..4798992,3	K562	blood:
2	chr6:4775250..4779402-chr6:4796974..4799490,3	MCF-7	breast:
3	chr6:4796490..4799008-chr6:4800485..4802144,2	K562	blood:
4	chr6:4758249..4760248-chr6:4797102..4799227,2	K562	blood:

Variant related genes	Relation type
ENSG00000236336	Chromatin interaction
ENSG00000153046	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1016878	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2875970	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57332003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58825791	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58938392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58992102	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59019088	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59362617	0.83[AMR][1000 genomes]
rs59469271	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59530044	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60161880	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60469143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60567289	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60650385	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61323400	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61657419	0.83[AMR][1000 genomes]
rs73348304	1.00[AMR][1000 genomes]
rs73348324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348337	1.00[AMR][1000 genomes]
rs73362531	1.00[AMR][1000 genomes]
rs73362548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73362552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364539	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364540	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364542	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364551	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364580	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs734783	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4787400-4808800	Weak transcription	Aorta	Aorta
2	chr6:4790000-4799800	Weak transcription	Ovary	ovary
3	chr6:4790200-4803200	Weak transcription	Pancreas	Pancrea
4	chr6:4790600-4801600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:4790800-4801200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:4790800-4801200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:4793600-4799600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:4793800-4798600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr6:4793800-4799600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:4793800-4799800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:4794800-4798400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:4794800-4801800	Weak transcription	Psoas Muscle	Psoas
13	chr6:4794800-4802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:4794800-4803200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:4794800-4803200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:4794800-4803600	Weak transcription	Esophagus	oesophagus
17	chr6:4794800-4804400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:4794800-4818800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:4795000-4799800	Weak transcription	Spleen	Spleen
20	chr6:4795000-4800800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:4795000-4802000	Weak transcription	Small Intestine	intestine
22	chr6:4795000-4802600	Weak transcription	Right Ventricle	heart
23	chr6:4795000-4803000	Weak transcription	Left Ventricle	heart
24	chr6:4795000-4803200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:4795000-4803200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:4795000-4803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:4795000-4806200	Weak transcription	Gastric	stomach
28	chr6:4795200-4800200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:4795200-4800800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:4795200-4800800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:4795200-4801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:4795200-4803400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:4795200-4803800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:4795200-4806600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:4795600-4799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:4796000-4801000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:4796200-4798600	Weak transcription	GM12878-XiMat	blood
38	chr6:4796400-4799800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:4796600-4801600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:4797200-4798600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:4797200-4799400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:4797400-4798600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:4797400-4803200	Weak transcription	HSMM	muscle
44	chr6:4797600-4798600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:4797800-4798400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:4797800-4798600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:4798000-4798400	Enhancers	K562	blood
48	chr6:4798000-4803200	Weak transcription	NHEK	skin
49	chr6:4798200-4799400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr6:4798200-4803600	Weak transcription	Hela-S3	cervix

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