Variant report

Variant	rs7336416
Chromosome Location	chr13:110360984-110360985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110359448..110362939-chr13:110431472..110434391,4	K562	blood:
2	chr13:110358996..110361391-chr13:110378038..110380639,2	K562	blood:
3	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:
4	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:
5	chr13:110357158..110358883-chr13:110360873..110363213,2	MCF-7	breast:
6	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:
7	chr13:110350767..110352519-chr13:110358277..110361113,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1411552	0.89[ASN][1000 genomes]
rs1550044	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1556225	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1928937	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4773073	0.89[ASN][1000 genomes]
rs7990738	0.88[ASN][1000 genomes]
rs8000638	0.90[ASN][1000 genomes]
rs892672	0.88[ASN][1000 genomes]
rs913947	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs913952	0.88[ASN][1000 genomes]
rs9301407	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9521489	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:110358600-110361000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:110358600-110363200	Weak transcription	Liver	Liver
5	chr13:110359000-110367800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr13:110359200-110361000	Flanking Active TSS	Dnd41	blood
7	chr13:110359800-110361000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:110359800-110368400	Weak transcription	Hela-S3	cervix
9	chr13:110360000-110367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:110360600-110364600	Weak transcription	K562	blood
11	chr13:110360600-110368000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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