Variant report

Variant	rs7990738
Chromosome Location	chr13:110379242-110379243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110373412..110375608-chr13:110378035..110379687,2	K562	blood:
2	chr13:110374753..110377130-chr13:110377523..110379398,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1004409	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1411552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1550041	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1550044	0.93[ASN][1000 genomes]
rs1556225	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1928937	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4773073	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61962673	0.81[AMR][1000 genomes]
rs7336416	0.88[ASN][1000 genomes]
rs8000638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs892672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913947	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs913952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301407	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9521489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9559633	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110373000-110382000	Enhancers	Liver	Liver
2	chr13:110373200-110381200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:110373600-110381200	Weak transcription	Brain Angular Gyrus	brain
4	chr13:110373600-110381200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:110375000-110381600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:110376400-110381000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:110376400-110381000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:110376400-110381200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:110377400-110382200	Transcr. at gene 5' and 3'	Dnd41	blood
10	chr13:110377600-110381200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:110377600-110381200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:110378200-110380400	Weak transcription	Adipose Nuclei	Adipose
13	chr13:110378200-110380600	Weak transcription	Brain Anterior Caudate	brain
14	chr13:110378200-110381200	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:110378200-110381200	Weak transcription	Brain Substantia Nigra	brain
16	chr13:110378200-110381600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr13:110378200-110381800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:110378400-110383000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr13:110378400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr13:110378600-110381800	Enhancers	Fetal Muscle Leg	muscle
21	chr13:110378600-110383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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