Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11148102	1.00[CHB][hapmap]
rs11838539	1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs11841025	0.89[CHB][hapmap]
rs11841517	1.00[CHB][hapmap]
rs11842654	1.00[CHB][hapmap]
rs12428098	1.00[CHB][hapmap]
rs12431130	0.99[ASN][1000 genomes]
rs12584738	1.00[CHB][hapmap]
rs12585232	1.00[CHB][hapmap]
rs1410116	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs17071168	0.80[EUR][1000 genomes]
rs1964891	0.86[EUR][1000 genomes]
rs1964892	0.86[EUR][1000 genomes]
rs2182219	0.86[EUR][1000 genomes]
rs2182375	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2182377	0.94[EUR][1000 genomes]
rs2296572	1.00[CHB][hapmap]
rs3742108	1.00[CHB][hapmap]
rs3782979	0.90[CHB][hapmap]
rs4942741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58316588	0.90[ASN][1000 genomes]
rs7325115	0.86[EUR][1000 genomes]
rs7982479	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7987109	0.86[EUR][1000 genomes]
rs7988917	0.92[EUR][1000 genomes]
rs7997347	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002322	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs840430	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9526440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534910	0.94[EUR][1000 genomes]
rs9534936	0.92[EUR][1000 genomes]
rs9567962	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7336631	MED4	cis	multi-tissue	Pritchard
rs7336631	MED4	cis	lesional skin	skin_eQTL
rs7336631	MED4	cis	normal skin	skin_eQTL
rs7336631	MED4	cis	uninvolved skin	skin_eQTL
rs7336631	MED4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48669800-48685400	Weak transcription	Brain Inferior Temporal Lobe	brain

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