Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:48671966-48672258	HepG2	liver:	n/a	chr13:48672095-48672106
2	CEBPB	chr13:48672009-48672160	HepG2	liver:	n/a	chr13:48672095-48672106

Variant related genes	Relation type
MED4	TF binding region

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11838539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12427516	0.86[EUR][1000 genomes]
rs12427964	0.82[EUR][1000 genomes]
rs12428055	0.86[EUR][1000 genomes]
rs12429099	0.82[EUR][1000 genomes]
rs12429348	0.82[EUR][1000 genomes]
rs12429746	0.82[EUR][1000 genomes]
rs12429993	0.82[EUR][1000 genomes]
rs12431057	0.82[EUR][1000 genomes]
rs1968029	0.86[EUR][1000 genomes]
rs2094191	0.86[EUR][1000 genomes]
rs2148242	0.82[EUR][1000 genomes]
rs2182374	0.82[EUR][1000 genomes]
rs2897496	0.82[EUR][1000 genomes]
rs35710390	0.86[EUR][1000 genomes]
rs4942741	0.99[ASN][1000 genomes]
rs57957392	0.86[EUR][1000 genomes]
rs58316588	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58634823	0.86[EUR][1000 genomes]
rs61585711	0.82[EUR][1000 genomes]
rs7336631	0.99[ASN][1000 genomes]
rs7982479	0.92[ASN][1000 genomes]
rs7997347	0.99[ASN][1000 genomes]
rs9526440	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430556	chr13:48516799-48679099	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv832601	chr13:48569952-48735939	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48669400-48674200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:48669800-48685400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:48671400-48672200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:48671400-48674400	Weak transcription	Stomach Mucosa	stomach
5	chr13:48671600-48675800	Enhancers	HepG2	liver

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